Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF600

Experiment: Ying_sugar7 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF599 and GFF600 are separated by 7 nucleotidesGFF600 and GFF601 are separated by 4 nucleotidesGFF601 and GFF602 are separated by 91 nucleotides GFF599 - Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1), at 273,491 to 274,861 GFF599 GFF600 - Phosphohydrolase (MutT/nudix family protein), at 274,869 to 275,486 GFF600 GFF601 - Transcriptional regulator, IclR family, at 275,491 to 276,252 GFF601 GFF602 - Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-), at 276,344 to 277,159 GFF602 Position (kb) 274 275 276Strain fitness (log2 ratio) -2 -1 0 1at 274.978 kb on - strand, within GFF600at 275.442 kb on + strandat 275.481 kb on + strandat 275.481 kb on + strandat 275.482 kb on - strandat 275.909 kb on + strand, within GFF601at 275.909 kb on + strand, within GFF601at 275.909 kb on + strand, within GFF601at 275.909 kb on + strand, within GFF601at 275.910 kb on - strand, within GFF601at 275.910 kb on - strand, within GFF601at 276.060 kb on - strand, within GFF601at 276.309 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 1
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274,978 - GFF600 0.18 -0.3
275,442 + -2.4
275,481 + -0.2
275,481 + +0.2
275,482 - +1.0
275,909 + GFF601 0.55 -0.2
275,909 + GFF601 0.55 +0.1
275,909 + GFF601 0.55 +0.2
275,909 + GFF601 0.55 -1.1
275,910 - GFF601 0.55 +0.0
275,910 - GFF601 0.55 -0.2
276,060 - GFF601 0.75 +0.9
276,309 + +0.0

Or see this region's nucleotide sequence