Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF60

Experiment: Ying_sugar7 rep C; time point 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF59 and GFF60 are separated by 9 nucleotidesGFF60 and GFF61 overlap by 4 nucleotides GFF59 - Tyrosine-protein kinase Wzc (EC 2.7.10.2), at 59,567 to 60,940 GFF59 GFF60 - Capsular polysaccharide biosynthesis/export periplasmic protein WcbA; Capsular polysaccharide export system protein KpsC, at 60,950 to 61,759 GFF60 GFF61 - hypothetical protein, at 61,756 to 62,721 GFF61 Position (kb) 60 61 62Strain fitness (log2 ratio) -1 0 1at 60.006 kb on + strand, within GFF59at 60.006 kb on + strand, within GFF59at 60.528 kb on + strand, within GFF59at 60.529 kb on - strand, within GFF59at 60.738 kb on + strand, within GFF59at 60.825 kb on + strandat 61.173 kb on + strand, within GFF60at 61.197 kb on + strand, within GFF60at 61.198 kb on - strand, within GFF60at 61.198 kb on - strand, within GFF60at 61.221 kb on - strand, within GFF60at 61.928 kb on + strand, within GFF61at 62.352 kb on - strand, within GFF61

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 1
remove
60,006 + GFF59 0.32 +0.2
60,006 + GFF59 0.32 +0.3
60,528 + GFF59 0.70 -1.0
60,529 - GFF59 0.70 +0.4
60,738 + GFF59 0.85 -1.2
60,825 + -0.2
61,173 + GFF60 0.28 +0.5
61,197 + GFF60 0.30 -0.6
61,198 - GFF60 0.31 +1.2
61,198 - GFF60 0.31 -0.3
61,221 - GFF60 0.33 +1.2
61,928 + GFF61 0.18 +0.9
62,352 - GFF61 0.62 -0.9

Or see this region's nucleotide sequence