Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5515

Experiment: Ying_sugar7 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 1
2,516,836	+		GFF5514	0.74	+0.8
2,516,837	-		GFF5514	0.74	-0.4
2,516,980	+		GFF5514	0.80	+0.9
2,516,980	+		GFF5514	0.80	+0.3
2,516,981	-		GFF5514	0.80	+0.0
2,516,981	-		GFF5514	0.80	-0.6
2,517,064	+		GFF5514	0.83	-0.2
2,517,065	-		GFF5514	0.84	-0.5
2,517,220	+				-1.2
2,517,220	+				-0.0
2,517,221	-				-0.0
2,517,221	-				-1.4
2,517,221	-				+0.1
2,517,307	+				+0.2
2,517,367	+				-0.1
2,517,367	+				-0.2
2,517,368	-				-0.0
2,517,368	-				-0.2
2,517,368	-				-0.7
2,517,368	-				-0.5
2,517,468	+				-0.3
2,517,468	+				+0.6
2,517,468	+				+0.1
2,517,469	-				-0.3
2,517,502	+				-0.4
2,517,502	+				-1.7
2,517,502	+				-0.6
2,517,503	-				-0.2
2,517,503	-				+0.5
2,517,503	-				-0.4
2,517,503	-				-0.3
2,517,503	-				-0.4
2,517,503	-				-1.6
2,517,503	-				-0.0
2,517,970	+		GFF5515	0.53	-0.3
2,517,971	-		GFF5515	0.53	-0.6
2,518,273	+				+0.5
2,518,273	+				-0.2
2,518,273	+				+0.0
2,518,273	+				+0.4
2,518,273	+				+1.4
2,518,274	-				-0.1
2,518,274	-				+0.5
2,518,274	-				-0.1
2,518,274	-				-0.6
2,518,375	+				+0.2
2,518,375	-				-0.0
2,518,576	+		GFF5516	0.24	-0.1
2,518,576	+		GFF5516	0.24	-1.0
2,518,576	+		GFF5516	0.24	+0.5
2,518,577	-		GFF5516	0.24	-0.2
2,518,577	-		GFF5516	0.24	+1.4
2,518,577	-		GFF5516	0.24	+0.5
2,518,597	+		GFF5516	0.26	-0.1
2,518,610	-		GFF5516	0.27	+0.0
2,518,610	-		GFF5516	0.27	-0.0
2,518,651	+		GFF5516	0.32	+0.6
2,518,651	+		GFF5516	0.32	-0.1
2,518,702	+		GFF5516	0.37	-0.7
2,518,702	+		GFF5516	0.37	-0.1
2,518,702	+		GFF5516	0.37	-0.3
2,518,702	+		GFF5516	0.37	+0.7
2,519,008	+		GFF5516	0.68	+0.1
2,519,008	+		GFF5516	0.68	+0.4
2,519,008	+		GFF5516	0.68	-0.7
2,519,008	+		GFF5516	0.68	-0.1
2,519,009	-		GFF5516	0.68	-1.0
2,519,009	-		GFF5516	0.68	-0.1