Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5384

Experiment: Ying_sugar7 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 1
2,385,558	+		GFF5383	0.39	-1.0
2,385,558	+		GFF5383	0.39	+0.1
2,385,656	+		GFF5383	0.46	-1.1
2,385,660	+		GFF5383	0.46	-0.6
2,385,660	+		GFF5383	0.46	+0.0
2,385,661	-		GFF5383	0.46	-1.4
2,385,831	+		GFF5383	0.57	+0.3
2,385,930	+		GFF5383	0.63	+0.1
2,385,940	-		GFF5383	0.63	-0.3
2,385,940	-		GFF5383	0.63	-0.2
2,385,940	-		GFF5383	0.63	-0.5
2,385,978	+		GFF5383	0.66	-0.3
2,385,979	-		GFF5383	0.66	+0.7
2,386,011	+		GFF5383	0.68	+0.2
2,386,011	+		GFF5383	0.68	+1.3
2,386,201	+		GFF5383	0.80	+0.6
2,386,243	-		GFF5383	0.82	+0.1
2,386,243	-		GFF5383	0.82	+0.2
2,386,351	-		GFF5383	0.89	-0.1
2,386,510	-				+1.1
2,386,510	-				-0.7
2,386,510	-				+0.5
2,386,510	-				+1.1
2,386,516	-				-0.6
2,386,516	-				-0.2
2,386,661	+				+0.0
2,386,772	+		GFF5384	0.17	+0.1
2,386,772	+		GFF5384	0.17	+0.4
2,386,773	-		GFF5384	0.17	-0.9
2,386,773	-		GFF5384	0.17	+0.0
2,387,721	-		GFF5384	0.85	-0.1
2,388,743	+				+1.2
2,388,743	+				+0.5
2,388,818	+				-1.8
2,388,818	+				-0.6
2,388,818	+				-0.3
2,388,819	-				+0.1
2,388,843	-				-1.4
2,388,879	-				+0.4