Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5335

Experiment: Ying_sugar7 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 1
2,334,037	+				+1.4
2,334,037	+				+0.4
2,334,038	-				-0.1
2,334,038	-				-0.6
2,334,067	+				+0.9
2,334,181	-				+0.7
2,334,181	-				-0.7
2,334,181	-				+0.0
2,334,234	+				+0.0
2,334,235	-				+1.4
2,334,235	-				-0.1
2,334,624	-				+0.1
2,334,747	-				+0.1
2,334,824	+				-0.5
2,334,825	-				+0.2
2,334,952	+		GFF5335	0.29	-0.0
2,334,953	-		GFF5335	0.29	+0.9
2,334,953	-		GFF5335	0.29	+0.0
2,335,164	+				-0.8
2,335,164	+				-0.0
2,335,164	+				+0.4
2,335,282	+		GFF5336	0.54	+0.2
2,335,282	+		GFF5336	0.54	+0.3
2,335,282	+		GFF5336	0.54	+0.2
2,335,282	+		GFF5336	0.54	-1.0
2,335,282	+		GFF5336	0.54	-1.3
2,335,283	-		GFF5336	0.54	+0.8
2,335,283	-		GFF5336	0.54	+0.5
2,335,283	-		GFF5336	0.54	+0.6
2,335,314	+		GFF5336	0.69	+0.4
2,335,314	+		GFF5336	0.69	-0.3
2,335,314	+		GFF5336	0.69	-0.1
2,335,314	+		GFF5336	0.69	-0.3
2,335,314	+		GFF5336	0.69	+0.0
2,335,314	+		GFF5336	0.69	-0.4
2,335,315	-		GFF5336	0.69	-0.8
2,335,315	-		GFF5336	0.69	-0.5
2,335,315	-		GFF5336	0.69	+0.1
2,335,556	+		GFF5337	0.18	-1.8
2,335,556	+		GFF5337	0.18	-0.5
2,335,556	+		GFF5337	0.18	-0.5
2,335,557	-		GFF5337	0.18	-0.1
2,335,643	+		GFF5337	0.26	-0.3
2,335,643	+		GFF5337	0.26	-1.4
2,335,643	+		GFF5337	0.26	-0.8
2,335,644	-		GFF5337	0.26	-0.2
2,335,694	+		GFF5337	0.30	+1.0