Experiment: Ying_sugar7 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF496 and GFF497 are separated by 63 nucleotides GFF497 and GFF498 are separated by 188 nucleotides GFF498 and GFF499 overlap by 7 nucleotides GFF499 and GFF500 are separated by 6 nucleotides GFF500 and GFF501 are separated by 38 nucleotides
GFF496 - hypothetical protein, at 166,644 to 166,787
GFF496
GFF497 - hypothetical protein, at 166,851 to 167,234
GFF497
GFF498 - hypothetical protein, at 167,423 to 168,382
GFF498
GFF499 - Type III secretion inner membrane protein (YscR,SpaR,HrcR,EscR,homologous to flagellar export components), at 168,376 to 168,531
GFF499
GFF500 - Type III secretion inner membrane protein (YscS,homologous to flagellar export components), at 168,538 to 168,810
GFF500
GFF501 - Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components), at 168,849 to 169,601
GFF501
Position (kb) 167
168
169 Strain fitness (log2 ratio) -1
0
1 at 166.469 kb on + strand at 166.470 kb on - strand at 166.488 kb on - strand at 166.529 kb on + strand at 166.602 kb on + strand at 166.602 kb on + strand at 166.602 kb on + strand at 166.602 kb on + strand at 166.603 kb on - strand at 166.603 kb on - strand at 166.603 kb on - strand at 166.608 kb on + strand at 166.609 kb on - strand at 166.611 kb on + strand at 166.611 kb on + strand at 166.644 kb on - strand at 166.719 kb on - strand, within GFF496 at 166.785 kb on + strand at 166.785 kb on + strand at 166.785 kb on + strand at 166.785 kb on + strand at 166.785 kb on + strand at 166.785 kb on - strand at 166.786 kb on - strand at 166.786 kb on - strand at 166.786 kb on - strand at 166.854 kb on + strand at 166.875 kb on + strand at 166.875 kb on + strand at 166.875 kb on + strand at 166.875 kb on + strand at 166.890 kb on + strand, within GFF497 at 166.992 kb on + strand, within GFF497 at 166.992 kb on + strand, within GFF497 at 167.061 kb on + strand, within GFF497 at 167.062 kb on - strand, within GFF497 at 167.237 kb on + strand at 167.237 kb on + strand at 167.237 kb on + strand at 167.237 kb on + strand at 167.237 kb on + strand at 167.237 kb on + strand at 167.238 kb on - strand at 167.249 kb on + strand at 167.249 kb on + strand at 167.250 kb on - strand at 167.594 kb on + strand, within GFF498 at 167.594 kb on + strand, within GFF498 at 167.595 kb on - strand, within GFF498 at 167.873 kb on + strand, within GFF498 at 167.874 kb on - strand, within GFF498 at 168.364 kb on + strand at 168.523 kb on + strand at 168.523 kb on + strand at 168.524 kb on - strand at 168.524 kb on - strand at 168.524 kb on - strand at 168.584 kb on - strand, within GFF500 at 168.584 kb on - strand, within GFF500 at 168.766 kb on + strand, within GFF500 at 168.767 kb on - strand, within GFF500 at 168.767 kb on - strand, within GFF500 at 168.767 kb on - strand, within GFF500 at 168.903 kb on + strand at 168.903 kb on + strand at 168.904 kb on - strand at 168.993 kb on + strand, within GFF501 at 169.213 kb on - strand, within GFF501 at 169.264 kb on - strand, within GFF501 at 169.264 kb on - strand, within GFF501 at 169.266 kb on + strand, within GFF501
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 1 remove 166,469 + -0.1 166,470 - +1.1 166,488 - +1.4 166,529 + +1.1 166,602 + +0.1 166,602 + +0.1 166,602 + -0.4 166,602 + -0.1 166,603 - -1.2 166,603 - -0.2 166,603 - -0.7 166,608 + +0.5 166,609 - +0.8 166,611 + -0.3 166,611 + +0.2 166,644 - -0.1 166,719 - GFF496 0.52 -1.1 166,785 + +0.3 166,785 + -0.2 166,785 + +1.4 166,785 + +0.2 166,785 + +0.4 166,785 - +1.0 166,786 - -1.1 166,786 - +0.6 166,786 - +0.4 166,854 + -0.4 166,875 + -0.4 166,875 + +0.4 166,875 + -0.6 166,875 + +0.0 166,890 + GFF497 0.10 -0.2 166,992 + GFF497 0.37 -0.3 166,992 + GFF497 0.37 -0.3 167,061 + GFF497 0.55 -0.5 167,062 - GFF497 0.55 +0.7 167,237 + +0.1 167,237 + +0.4 167,237 + -0.1 167,237 + +0.4 167,237 + +0.2 167,237 + -0.3 167,238 - +1.4 167,249 + +0.3 167,249 + +0.6 167,250 - +1.2 167,594 + GFF498 0.18 +0.1 167,594 + GFF498 0.18 -0.0 167,595 - GFF498 0.18 +0.0 167,873 + GFF498 0.47 -1.1 167,874 - GFF498 0.47 +0.9 168,364 + -0.1 168,523 + +0.2 168,523 + -0.2 168,524 - -0.9 168,524 - +0.6 168,524 - +0.4 168,584 - GFF500 0.17 -0.9 168,584 - GFF500 0.17 -0.1 168,766 + GFF500 0.84 -0.2 168,767 - GFF500 0.84 +0.0 168,767 - GFF500 0.84 -0.3 168,767 - GFF500 0.84 +0.1 168,903 + -0.2 168,903 + +0.1 168,904 - -0.8 168,993 + GFF501 0.19 +0.5 169,213 - GFF501 0.48 -0.1 169,264 - GFF501 0.55 +0.3 169,264 - GFF501 0.55 +0.9 169,266 + GFF501 0.55 -0.6
Or see this region's nucleotide sequence