Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4883

Experiment: Ying_sugar7 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 1
1,891,821	+				-0.0
1,891,821	+				+0.3
1,892,028	+		GFF4882	0.12	+0.8
1,892,028	+		GFF4882	0.12	-0.5
1,892,029	-		GFF4882	0.12	-0.3
1,892,029	-		GFF4882	0.12	-0.6
1,892,268	+		GFF4882	0.45	+0.5
1,892,268	+		GFF4882	0.45	+0.8
1,892,268	+		GFF4882	0.45	-0.2
1,892,268	+		GFF4882	0.45	-0.8
1,892,269	-		GFF4882	0.45	-0.3
1,892,304	+		GFF4882	0.50	+0.3
1,892,304	+		GFF4882	0.50	+0.5
1,892,304	+		GFF4882	0.50	+0.4
1,892,304	+		GFF4882	0.50	-1.1
1,892,304	+		GFF4882	0.50	-0.4
1,892,304	+		GFF4882	0.50	+0.2
1,892,305	-		GFF4882	0.50	-0.0
1,892,305	-		GFF4882	0.50	+0.3
1,892,305	-		GFF4882	0.50	+0.1
1,892,305	-		GFF4882	0.50	-0.1
1,892,305	-		GFF4882	0.50	-0.4
1,892,305	-		GFF4882	0.50	+0.0
1,892,305	-		GFF4882	0.50	-0.1
1,892,305	-		GFF4882	0.50	-0.2
1,892,305	-		GFF4882	0.50	-0.0
1,892,424	+		GFF4882	0.67	-0.1
1,892,424	+		GFF4882	0.67	-0.2
1,892,425	-		GFF4882	0.67	-0.1
1,892,425	-		GFF4882	0.67	-0.5
1,892,448	+		GFF4882	0.70	+0.2
1,892,448	+		GFF4882	0.70	-0.2
1,892,449	-		GFF4882	0.70	+0.1
1,892,449	-		GFF4882	0.70	+0.1
1,892,449	-		GFF4882	0.70	-0.8
1,892,449	-		GFF4882	0.70	-0.5
1,892,454	+		GFF4882	0.71	-0.3
1,892,454	+		GFF4882	0.71	-0.0
1,892,454	+		GFF4882	0.71	-0.5
1,892,454	+		GFF4882	0.71	-0.2
1,892,455	-		GFF4882	0.71	+1.4
1,892,455	-		GFF4882	0.71	+0.4
1,892,455	-		GFF4882	0.71	+0.3
1,892,455	-		GFF4882	0.71	-0.4
1,892,455	-		GFF4882	0.71	+0.6
1,892,455	-		GFF4882	0.71	+0.9
1,892,455	-		GFF4882	0.71	+0.6
1,892,455	-		GFF4882	0.71	+0.4
1,892,455	-		GFF4882	0.71	-0.2
1,892,455	-		GFF4882	0.71	+0.4
1,892,455	-		GFF4882	0.71	+0.3
1,892,473	-		GFF4882	0.73	+1.4
1,892,731	-				+0.2
1,892,736	-				+0.2
1,892,971	+				-0.3
1,892,971	+				-0.0
1,892,971	+				-0.7
1,892,971	+				+0.3
1,892,971	+				-0.3
1,892,971	+				-0.3
1,892,971	+				-1.6
1,892,971	+				+0.6
1,892,972	-				+2.8
1,892,972	-				-0.5
1,892,972	-				-0.0
1,892,972	-				-0.3
1,892,972	-				-0.0
1,893,139	+		GFF4883	0.20	-0.7
1,893,139	+		GFF4883	0.20	-0.7
1,893,139	+		GFF4883	0.20	-0.1
1,893,139	+		GFF4883	0.20	+0.7
1,893,139	+		GFF4883	0.20	+0.0
1,893,139	+		GFF4883	0.20	-1.0
1,893,139	+		GFF4883	0.20	+0.3
1,893,140	-		GFF4883	0.20	+0.3
1,893,235	+		GFF4883	0.26	+0.2
1,893,235	+		GFF4883	0.26	-0.1
1,893,236	-		GFF4883	0.26	-0.1
1,893,340	+		GFF4883	0.32	+0.1
1,893,340	+		GFF4883	0.32	-0.7
1,893,340	+		GFF4883	0.32	+0.3
1,893,340	+		GFF4883	0.32	-0.1
1,893,341	-		GFF4883	0.32	-0.6
1,893,341	-		GFF4883	0.32	-1.2
1,893,341	-		GFF4883	0.32	+0.5
1,893,341	-		GFF4883	0.32	-0.1
1,893,341	-		GFF4883	0.32	+0.3
1,893,341	-		GFF4883	0.32	-0.2
1,893,341	-		GFF4883	0.32	+0.8
1,893,341	-		GFF4883	0.32	-0.5
1,893,341	-		GFF4883	0.32	+0.8
1,893,341	-		GFF4883	0.32	+0.5
1,893,415	+		GFF4883	0.36	-0.2
1,893,415	+		GFF4883	0.36	+0.1
1,893,416	-		GFF4883	0.36	-1.0
1,893,416	-		GFF4883	0.36	-0.3
1,893,586	+		GFF4883	0.47	-0.3
1,893,587	-		GFF4883	0.47	-0.2
1,893,649	+		GFF4883	0.51	-0.8
1,893,649	+		GFF4883	0.51	+0.6
1,893,649	+		GFF4883	0.51	-0.8
1,893,650	-		GFF4883	0.51	+0.1
1,893,650	-		GFF4883	0.51	+0.7
1,893,650	-		GFF4883	0.51	+0.0
1,893,685	+		GFF4883	0.53	-0.0
1,893,685	+		GFF4883	0.53	+1.4
1,893,685	+		GFF4883	0.53	-0.6
1,893,685	+		GFF4883	0.53	-0.3
1,893,686	-		GFF4883	0.53	+1.6
1,893,686	-		GFF4883	0.53	-0.5
1,893,686	-		GFF4883	0.53	-0.7
1,893,686	-		GFF4883	0.53	+0.5
1,893,686	-		GFF4883	0.53	+0.5
1,893,686	-		GFF4883	0.53	-0.1
1,893,691	+		GFF4883	0.53	-0.1
1,893,691	+		GFF4883	0.53	-0.5
1,893,691	+		GFF4883	0.53	+0.6
1,893,691	+		GFF4883	0.53	-0.1
1,893,691	+		GFF4883	0.53	+0.1
1,893,692	-		GFF4883	0.53	+0.6
1,893,692	-		GFF4883	0.53	-1.8
1,893,692	-		GFF4883	0.53	+0.4
1,893,692	-		GFF4883	0.53	-0.6
1,893,856	+		GFF4883	0.63	+1.4
1,893,856	+		GFF4883	0.63	-0.5
1,893,856	+		GFF4883	0.63	-0.1
1,893,856	+		GFF4883	0.63	+0.4
1,893,856	+		GFF4883	0.63	+1.2
1,893,856	+		GFF4883	0.63	+0.2
1,893,856	+		GFF4883	0.63	+0.0
1,893,856	+		GFF4883	0.63	-1.5
1,893,857	-		GFF4883	0.63	+0.1
1,893,857	-		GFF4883	0.63	+0.1
1,893,857	-		GFF4883	0.63	-0.6
1,893,884	-		GFF4883	0.65	+0.8
1,893,884	-		GFF4883	0.65	-0.2
1,893,971	-		GFF4883	0.70	-0.4
1,893,994	+		GFF4883	0.71	+1.0
1,893,995	-		GFF4883	0.71	-0.3
1,894,102	+		GFF4883	0.78	+0.7
1,894,103	-		GFF4883	0.78	-0.4
1,894,103	-		GFF4883	0.78	-0.4
1,894,168	+		GFF4883	0.82	-0.1
1,894,168	+		GFF4883	0.82	+0.1
1,894,168	+		GFF4883	0.82	+0.4
1,894,168	+		GFF4883	0.82	+0.7
1,894,168	+		GFF4883	0.82	+0.0
1,894,168	+		GFF4883	0.82	-0.4
1,894,168	+		GFF4883	0.82	+0.5
1,894,169	-		GFF4883	0.82	-1.4
1,894,169	-		GFF4883	0.82	-0.3
1,894,169	-		GFF4883	0.82	-1.1
1,894,169	-		GFF4883	0.82	+0.1
1,894,169	-		GFF4883	0.82	+0.9
1,894,169	-		GFF4883	0.82	+0.8
1,894,235	-		GFF4883	0.86	-0.2
1,894,242	-		GFF4883	0.86	-0.5
1,894,483	+				-0.3
1,894,483	+				-0.9
1,894,483	+				+0.1
1,894,484	-				+0.4
1,894,484	-				+0.4
1,894,549	+				-0.7
1,894,549	+				-0.2
1,894,549	+				-0.1
1,894,549	+				+0.2
1,894,549	+				-0.3
1,894,550	-				-0.4
1,894,550	-				+0.1
1,894,550	-				-1.0
1,894,550	-				+0.2
1,894,622	+		GFF4884	0.13	-0.2
1,894,622	+		GFF4884	0.13	+0.1
1,894,623	-		GFF4884	0.13	-0.7
1,894,623	-		GFF4884	0.13	+0.6
1,894,760	+		GFF4884	0.38	+0.1
1,894,823	+		GFF4884	0.49	+0.5
1,894,823	+		GFF4884	0.49	-0.4
1,894,823	+		GFF4884	0.49	-0.1
1,894,824	-		GFF4884	0.50	-0.3
1,894,967	+		GFF4884	0.76	+0.0
1,894,967	+		GFF4884	0.76	-0.2
1,894,967	+		GFF4884	0.76	-0.3
1,894,967	+		GFF4884	0.76	+0.4
1,894,967	+		GFF4884	0.76	+0.8
1,894,967	+		GFF4884	0.76	-0.7
1,894,967	+		GFF4884	0.76	-0.6
1,894,968	-		GFF4884	0.76	+0.4
1,894,968	-		GFF4884	0.76	-0.6
1,894,968	-		GFF4884	0.76	-0.3
1,894,968	-		GFF4884	0.76	+0.1
1,894,968	-		GFF4884	0.76	-0.4
1,895,043	-		GFF4884	0.89	-2.1