Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF468

Experiment: Ying_sugar7 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF466 and GFF467 are separated by 8 nucleotidesGFF467 and GFF468 are separated by 61 nucleotidesGFF468 and GFF469 are separated by 13 nucleotides GFF466 - Isochorismatase (EC 3.3.2.1), at 130,888 to 131,577 GFF466 GFF467 - Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1), at 131,586 to 132,506 GFF467 GFF468 - Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1), at 132,568 to 133,665 GFF468 GFF469 - Nucleoside ABC transporter, periplasmic nucleoside-binding protein, at 133,679 to 134,785 GFF469 Position (kb) 132 133 134Strain fitness (log2 ratio) -1 0 1at 131.674 kb on + strandat 132.328 kb on + strand, within GFF467at 133.241 kb on + strand, within GFF468at 134.347 kb on - strand, within GFF469at 134.347 kb on - strand, within GFF469at 134.481 kb on + strand, within GFF469at 134.649 kb on + strand, within GFF469at 134.649 kb on + strand, within GFF469

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 1
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131,674 + +0.6
132,328 + GFF467 0.81 +0.5
133,241 + GFF468 0.61 +0.8
134,347 - GFF469 0.60 +0.1
134,347 - GFF469 0.60 +1.0
134,481 + GFF469 0.72 +0.5
134,649 + GFF469 0.88 -1.0
134,649 + GFF469 0.88 -0.2

Or see this region's nucleotide sequence