Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4554

Experiment: Ying_sugar7 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4553 and GFF4554 are separated by 150 nucleotidesGFF4554 and GFF4555 are separated by 14 nucleotides GFF4553 - N-succinyl-L,L-diaminopimelate aminotransferase alternative (EC 2.6.1.17), at 1,485,036 to 1,486,259 GFF4553 GFF4554 - Chromosome partition protein smc, at 1,486,410 to 1,489,928 GFF4554 GFF4555 - Cell division protein, at 1,489,943 to 1,491,079 GFF4555 Position (kb) 1486 1487 1488 1489 1490Strain fitness (log2 ratio) -2 -1 0 1at 1485.445 kb on + strand, within GFF4553at 1485.446 kb on - strand, within GFF4553at 1485.446 kb on - strand, within GFF4553at 1485.446 kb on - strand, within GFF4553at 1485.446 kb on - strand, within GFF4553at 1485.454 kb on + strand, within GFF4553at 1485.625 kb on + strand, within GFF4553at 1485.625 kb on + strand, within GFF4553at 1485.626 kb on - strand, within GFF4553at 1485.626 kb on - strand, within GFF4553at 1485.637 kb on + strand, within GFF4553at 1485.637 kb on + strand, within GFF4553at 1485.637 kb on + strand, within GFF4553at 1485.637 kb on + strand, within GFF4553at 1485.638 kb on - strand, within GFF4553at 1485.638 kb on - strand, within GFF4553at 1485.832 kb on + strand, within GFF4553at 1485.832 kb on + strand, within GFF4553at 1485.832 kb on + strand, within GFF4553at 1485.832 kb on + strand, within GFF4553at 1485.832 kb on + strand, within GFF4553at 1485.833 kb on - strand, within GFF4553at 1485.833 kb on - strand, within GFF4553at 1485.833 kb on - strand, within GFF4553at 1485.833 kb on - strand, within GFF4553at 1485.833 kb on - strand, within GFF4553at 1485.833 kb on - strand, within GFF4553at 1485.834 kb on - strand, within GFF4553at 1485.834 kb on - strand, within GFF4553at 1485.835 kb on + strand, within GFF4553at 1485.836 kb on - strand, within GFF4553at 1485.836 kb on - strand, within GFF4553at 1485.836 kb on - strand, within GFF4553at 1485.836 kb on - strand, within GFF4553at 1485.836 kb on - strand, within GFF4553at 1485.836 kb on - strand, within GFF4553at 1485.836 kb on - strand, within GFF4553at 1485.871 kb on + strand, within GFF4553at 1485.871 kb on + strand, within GFF4553at 1485.871 kb on + strand, within GFF4553at 1485.871 kb on + strand, within GFF4553at 1485.871 kb on + strand, within GFF4553at 1485.872 kb on - strand, within GFF4553at 1485.872 kb on - strand, within GFF4553at 1485.872 kb on - strand, within GFF4553at 1485.872 kb on - strand, within GFF4553at 1485.872 kb on - strand, within GFF4553at 1486.012 kb on + strand, within GFF4553at 1486.013 kb on - strand, within GFF4553at 1486.075 kb on + strand, within GFF4553at 1486.075 kb on + strand, within GFF4553at 1486.075 kb on + strand, within GFF4553at 1486.324 kb on + strandat 1486.325 kb on - strandat 1486.381 kb on + strandat 1490.102 kb on + strand, within GFF4555at 1490.679 kb on - strand, within GFF4555

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 1
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1,485,445 + GFF4553 0.33 +0.1
1,485,446 - GFF4553 0.33 -0.0
1,485,446 - GFF4553 0.33 +0.2
1,485,446 - GFF4553 0.33 -0.5
1,485,446 - GFF4553 0.33 +0.3
1,485,454 + GFF4553 0.34 -0.1
1,485,625 + GFF4553 0.48 +0.7
1,485,625 + GFF4553 0.48 -0.2
1,485,626 - GFF4553 0.48 -2.4
1,485,626 - GFF4553 0.48 +0.1
1,485,637 + GFF4553 0.49 +0.2
1,485,637 + GFF4553 0.49 -0.0
1,485,637 + GFF4553 0.49 +1.2
1,485,637 + GFF4553 0.49 -0.2
1,485,638 - GFF4553 0.49 +0.2
1,485,638 - GFF4553 0.49 -0.1
1,485,832 + GFF4553 0.65 -0.7
1,485,832 + GFF4553 0.65 -0.4
1,485,832 + GFF4553 0.65 +0.1
1,485,832 + GFF4553 0.65 -0.0
1,485,832 + GFF4553 0.65 -1.4
1,485,833 - GFF4553 0.65 -0.2
1,485,833 - GFF4553 0.65 -0.1
1,485,833 - GFF4553 0.65 -0.3
1,485,833 - GFF4553 0.65 +0.2
1,485,833 - GFF4553 0.65 +1.2
1,485,833 - GFF4553 0.65 -0.4
1,485,834 - GFF4553 0.65 -1.2
1,485,834 - GFF4553 0.65 -0.3
1,485,835 + GFF4553 0.65 -0.4
1,485,836 - GFF4553 0.65 -0.6
1,485,836 - GFF4553 0.65 +0.4
1,485,836 - GFF4553 0.65 -1.6
1,485,836 - GFF4553 0.65 -0.4
1,485,836 - GFF4553 0.65 +0.2
1,485,836 - GFF4553 0.65 -1.8
1,485,836 - GFF4553 0.65 -0.6
1,485,871 + GFF4553 0.68 -0.3
1,485,871 + GFF4553 0.68 -0.9
1,485,871 + GFF4553 0.68 -0.6
1,485,871 + GFF4553 0.68 -0.3
1,485,871 + GFF4553 0.68 -0.5
1,485,872 - GFF4553 0.68 -0.2
1,485,872 - GFF4553 0.68 -0.4
1,485,872 - GFF4553 0.68 +0.2
1,485,872 - GFF4553 0.68 -0.5
1,485,872 - GFF4553 0.68 +0.2
1,486,012 + GFF4553 0.80 +0.1
1,486,013 - GFF4553 0.80 -0.3
1,486,075 + GFF4553 0.85 -0.6
1,486,075 + GFF4553 0.85 -0.2
1,486,075 + GFF4553 0.85 -0.5
1,486,324 + -0.1
1,486,325 - -0.3
1,486,381 + +0.0
1,490,102 + GFF4555 0.14 +1.4
1,490,679 - GFF4555 0.65 -0.4

Or see this region's nucleotide sequence