Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4540

Experiment: Ying_sugar7 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 1
1,466,317	+		GFF4539	0.43	-0.3
1,466,317	+		GFF4539	0.43	+0.3
1,466,317	+		GFF4539	0.43	-0.5
1,466,317	+		GFF4539	0.43	+0.7
1,466,318	-		GFF4539	0.43	-1.6
1,466,318	-		GFF4539	0.43	+0.6
1,466,318	-		GFF4539	0.43	+0.4
1,466,318	-		GFF4539	0.43	+0.1
1,466,318	-		GFF4539	0.43	-0.5
1,466,531	-		GFF4539	0.63	-0.1
1,466,531	-		GFF4539	0.63	-0.5
1,466,656	+		GFF4539	0.75	+0.4
1,466,656	+		GFF4539	0.75	-0.1
1,466,656	+		GFF4539	0.75	-0.8
1,467,130	+		GFF4540	0.11	+0.9
1,467,131	-		GFF4540	0.11	+0.9
1,467,131	-		GFF4540	0.11	-0.4
1,467,190	+		GFF4540	0.18	-0.1
1,467,190	+		GFF4540	0.18	+0.7
1,467,191	-		GFF4540	0.18	+0.1
1,467,191	-		GFF4540	0.18	+0.6
1,467,511	+		GFF4540	0.51	-0.2
1,467,511	+		GFF4540	0.51	-0.1
1,467,511	+		GFF4540	0.51	+0.3
1,467,511	+		GFF4540	0.51	+0.2
1,467,512	-		GFF4540	0.51	+0.1
1,467,695	-		GFF4540	0.70	+0.4
1,467,967	+				+0.7
1,468,138	-		GFF4541	0.15	+0.7
1,468,308	+		GFF4541	0.31	-0.7
1,468,308	+		GFF4541	0.31	-0.4
1,468,309	-		GFF4541	0.31	+0.1
1,468,309	-		GFF4541	0.31	+0.3
1,468,309	-		GFF4541	0.31	-1.1
1,468,421	-		GFF4541	0.41	+0.4
1,468,421	-		GFF4541	0.41	+0.4
1,468,540	-		GFF4541	0.52	+1.0
1,468,540	-		GFF4541	0.52	+1.4
1,468,540	-		GFF4541	0.52	-0.2
1,468,821	+		GFF4541	0.77	+0.1
1,468,822	-		GFF4541	0.77	+0.1
1,468,844	+		GFF4541	0.79	-0.9
1,468,844	+		GFF4541	0.79	+1.4
1,468,845	-		GFF4541	0.80	-1.2
1,468,845	-		GFF4541	0.80	-1.1
1,468,890	+		GFF4541	0.84	+0.7
1,468,901	-		GFF4541	0.85	-0.2
1,468,901	-		GFF4541	0.85	-0.3