Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4361

Experiment: Ying_sugar7 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 1
1,290,267	+		GFF4360	0.25	+0.4
1,290,286	+		GFF4360	0.27	+0.1
1,290,286	+		GFF4360	0.27	+1.8
1,290,286	+		GFF4360	0.27	-0.0
1,290,287	-		GFF4360	0.27	+0.6
1,290,403	+		GFF4360	0.37	-0.4
1,290,404	-		GFF4360	0.37	-0.2
1,290,404	-		GFF4360	0.37	+0.0
1,290,404	-		GFF4360	0.37	-1.0
1,290,463	+		GFF4360	0.42	+0.5
1,290,463	+		GFF4360	0.42	-0.1
1,290,463	+		GFF4360	0.42	-0.2
1,290,464	-		GFF4360	0.42	-0.2
1,290,555	+		GFF4360	0.49	+0.5
1,290,555	+		GFF4360	0.49	-1.0
1,290,555	+		GFF4360	0.49	-0.8
1,290,556	-		GFF4360	0.50	+0.2
1,290,556	-		GFF4360	0.50	+0.6
1,290,556	-		GFF4360	0.50	+0.4
1,290,562	+		GFF4360	0.50	-0.7
1,290,767	+		GFF4360	0.67	+0.7
1,290,767	+		GFF4360	0.67	+0.1
1,290,767	+		GFF4360	0.67	+0.3
1,290,768	-		GFF4360	0.67	+0.4
1,290,768	-		GFF4360	0.67	-0.3
1,290,768	-		GFF4360	0.67	+0.4
1,290,768	-		GFF4360	0.67	+0.3
1,290,768	-		GFF4360	0.67	-0.2
1,291,000	+		GFF4360	0.87	-0.1
1,291,001	-		GFF4360	0.87	+0.2
1,291,001	-		GFF4360	0.87	+0.0
1,291,001	-		GFF4360	0.87	-0.9
1,291,001	-		GFF4360	0.87	+0.5
1,291,076	-				+0.4
1,291,293	-				+0.0
1,291,293	-				-1.2
1,291,331	+				+0.2
1,291,331	+				+0.5
1,291,332	-				+0.5
1,291,332	-				-0.3
1,291,332	-				+0.7
1,291,332	-				-0.8
1,291,365	+		GFF4361	0.12	+0.5
1,291,365	+		GFF4361	0.12	-0.4
1,291,365	+		GFF4361	0.12	+0.1
1,291,365	+		GFF4361	0.12	-0.9
1,291,365	+		GFF4361	0.12	-0.0
1,291,365	+		GFF4361	0.12	-0.4
1,291,365	+		GFF4361	0.12	-0.6
1,291,365	+		GFF4361	0.12	-0.2
1,291,365	+		GFF4361	0.12	-1.8
1,291,365	+		GFF4361	0.12	-0.3
1,291,365	+		GFF4361	0.12	+1.3
1,291,366	-		GFF4361	0.12	-0.1
1,291,366	-		GFF4361	0.12	-0.1
1,291,366	-		GFF4361	0.12	-0.3
1,291,366	-		GFF4361	0.12	+0.1
1,291,366	-		GFF4361	0.12	-0.0
1,291,366	-		GFF4361	0.12	+0.2
1,291,366	-		GFF4361	0.12	-0.1
1,291,367	-		GFF4361	0.12	+1.0
1,291,368	+		GFF4361	0.12	-1.3
1,291,368	+		GFF4361	0.12	-0.5
1,291,368	+		GFF4361	0.12	-0.4
1,291,368	+		GFF4361	0.12	+0.2
1,291,369	-		GFF4361	0.12	+0.7
1,291,369	-		GFF4361	0.12	+0.3
1,291,369	-		GFF4361	0.12	-0.2
1,291,369	-		GFF4361	0.12	+0.1
1,291,369	-		GFF4361	0.12	+0.0
1,291,369	-		GFF4361	0.12	-0.1
1,291,369	-		GFF4361	0.12	+1.0
1,291,369	-		GFF4361	0.12	+0.3
1,291,386	+		GFF4361	0.14	-0.4
1,291,473	+		GFF4361	0.22	+0.8
1,291,473	+		GFF4361	0.22	-1.3
1,291,473	+		GFF4361	0.22	+0.3
1,291,474	-		GFF4361	0.22	+0.0
1,291,544	+		GFF4361	0.29	+0.2
1,291,698	+		GFF4361	0.44	+0.5
1,291,698	+		GFF4361	0.44	+0.1
1,291,698	+		GFF4361	0.44	+0.8
1,291,698	+		GFF4361	0.44	-0.2
1,291,699	-		GFF4361	0.44	-1.0
1,291,699	-		GFF4361	0.44	+0.6
1,291,699	-		GFF4361	0.44	+0.1
1,291,825	+		GFF4361	0.56	+0.2
1,291,899	+		GFF4361	0.64	-0.2
1,291,899	+		GFF4361	0.64	-0.3
1,291,900	-		GFF4361	0.64	+0.3
1,291,900	-		GFF4361	0.64	-0.5
1,291,900	-		GFF4361	0.64	+0.8
1,291,900	-		GFF4361	0.64	+0.5
1,291,900	-		GFF4361	0.64	+0.5
1,291,900	-		GFF4361	0.64	+0.8
1,291,908	+		GFF4361	0.64	+0.4
1,291,908	+		GFF4361	0.64	+0.3
1,291,909	-		GFF4361	0.65	+0.0
1,291,909	-		GFF4361	0.65	+0.0
1,291,909	-		GFF4361	0.65	+0.6
1,291,926	+		GFF4361	0.66	-0.2
1,291,927	-		GFF4361	0.66	+0.9
1,291,953	+		GFF4361	0.69	+0.5
1,291,954	-		GFF4361	0.69	-0.9
1,291,954	-		GFF4361	0.69	+0.5
1,292,327	+		GFF4362	0.12	+0.9
1,292,327	+		GFF4362	0.12	-1.3
1,292,327	+		GFF4362	0.12	-0.9
1,292,327	+		GFF4362	0.12	+0.0
1,292,327	+		GFF4362	0.12	+1.7
1,292,327	+		GFF4362	0.12	-1.5
1,292,328	-		GFF4362	0.12	+1.1
1,292,328	-		GFF4362	0.12	-0.7
1,292,328	-		GFF4362	0.12	+0.1
1,292,328	-		GFF4362	0.12	-0.0
1,292,328	-		GFF4362	0.12	+1.7
1,292,433	+		GFF4362	0.34	-0.5
1,292,434	-		GFF4362	0.34	-0.1
1,292,434	-		GFF4362	0.34	-0.3
1,292,435	+		GFF4362	0.34	-0.4
1,292,435	+		GFF4362	0.34	+2.2
1,292,436	-		GFF4362	0.35	+0.6
1,292,436	-		GFF4362	0.35	+0.2
1,292,436	-		GFF4362	0.35	-0.3
1,292,436	-		GFF4362	0.35	-0.7
1,292,436	-		GFF4362	0.35	-0.1
1,292,436	-		GFF4362	0.35	-0.4
1,292,588	+		GFF4362	0.66	+0.7
1,292,588	+		GFF4362	0.66	+0.1
1,292,589	-		GFF4362	0.66	+0.4
1,292,589	-		GFF4362	0.66	+0.3
1,292,702	+		GFF4362	0.90	+0.8
1,292,702	+		GFF4362	0.90	+1.1
1,292,703	-				-0.1
1,292,758	-				+0.1
1,292,758	-				-0.1
1,292,762	+				+0.2
1,292,762	+				+0.0
1,292,762	+				+2.0
1,292,762	+				-0.1
1,292,763	-				+0.6
1,292,763	-				+0.5
1,292,763	-				-1.1
1,292,797	+				+0.1
1,292,797	+				+0.6
1,292,797	+				+0.7
1,292,798	-				+0.3
1,292,798	-				-0.1
1,292,894	+				+0.3
1,292,895	-				+3.0
1,292,919	+				-0.1
1,292,920	-				-2.6
1,292,980	+				+0.5
1,293,109	+				+0.2
1,293,109	+				+0.1
1,293,110	-				-0.4
1,293,145	+				-0.7
1,293,171	+				+2.0
1,293,207	+				+0.3
1,293,207	+				+0.3
1,293,207	+				+0.1
1,293,208	-				+0.4
1,293,208	-				+0.7
1,293,208	-				+1.5
1,293,208	-				+1.2
1,293,248	+				+0.1
1,293,248	+				-0.9
1,293,249	-				+0.1
1,293,249	-				+0.1
1,293,249	-				-0.5
1,293,249	-				+0.5
1,293,249	-				-0.4
1,293,249	-				-1.6