Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4359

Experiment: Ying_sugar7 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 1
1,288,239	+		GFF4358	0.19	+0.1
1,288,239	+		GFF4358	0.19	-0.4
1,288,239	+		GFF4358	0.19	+0.2
1,288,239	+		GFF4358	0.19	+0.4
1,288,240	-		GFF4358	0.19	-0.3
1,288,240	-		GFF4358	0.19	+0.2
1,288,240	-		GFF4358	0.19	+0.0
1,288,516	+		GFF4358	0.41	-0.3
1,288,516	+		GFF4358	0.41	+0.1
1,288,516	+		GFF4358	0.41	-0.8
1,288,517	-		GFF4358	0.41	+0.8
1,288,666	+		GFF4358	0.53	+0.5
1,288,667	-		GFF4358	0.53	-0.8
1,288,819	+		GFF4358	0.65	-0.1
1,288,820	-		GFF4358	0.65	-0.4
1,288,820	-		GFF4358	0.65	+1.1
1,288,820	-		GFF4358	0.65	+1.2
1,288,820	-		GFF4358	0.65	-0.3
1,288,820	-		GFF4358	0.65	+0.9
1,288,900	+		GFF4358	0.71	+0.0
1,288,900	+		GFF4358	0.71	-1.0
1,288,901	-		GFF4358	0.71	-0.0
1,288,901	-		GFF4358	0.71	+1.3
1,288,999	-		GFF4358	0.79	+0.2
1,289,019	+		GFF4358	0.81	+0.2
1,289,113	+		GFF4358	0.88	-0.2
1,289,113	+		GFF4358	0.88	-0.5
1,289,372	+		GFF4359	0.60	-0.5
1,289,373	-		GFF4359	0.60	+0.2
1,289,433	+		GFF4359	0.87	-0.2
1,289,433	+		GFF4359	0.87	-0.0
1,289,433	+		GFF4359	0.87	+0.1
1,289,433	+		GFF4359	0.87	-0.2
1,289,434	-		GFF4359	0.88	+1.0
1,289,434	-		GFF4359	0.88	-0.4
1,289,434	-		GFF4359	0.88	-0.6
1,289,434	-		GFF4359	0.88	-0.4
1,289,434	-		GFF4359	0.88	-0.8
1,289,434	-		GFF4359	0.88	-2.7
1,289,434	-		GFF4359	0.88	+0.5
1,289,496	+				+1.4
1,289,702	+				-0.8
1,289,702	+				-0.0
1,289,702	+				-0.5
1,289,702	+				-0.6
1,289,702	+				-0.0
1,289,702	+				-1.8
1,289,702	+				-0.0
1,289,702	+				+1.0
1,289,703	-				-0.3
1,289,703	-				-0.1
1,289,703	-				-0.2
1,289,734	-				+0.6
1,289,734	-				+1.0
1,289,734	-				-0.5
1,289,814	+				+1.2
1,289,814	+				+0.0
1,289,814	+				-0.0
1,289,815	-				-0.2
1,289,844	-				+0.4
1,290,002	-				-0.4
1,290,092	+		GFF4360	0.11	-0.3
1,290,092	+		GFF4360	0.11	+0.3
1,290,093	-		GFF4360	0.11	+1.3
1,290,093	-		GFF4360	0.11	+0.5
1,290,093	-		GFF4360	0.11	+0.8
1,290,098	+		GFF4360	0.11	+0.8
1,290,099	-		GFF4360	0.11	+0.5
1,290,216	+		GFF4360	0.21	-0.2
1,290,267	+		GFF4360	0.25	+0.4
1,290,286	+		GFF4360	0.27	+0.1
1,290,286	+		GFF4360	0.27	-0.0
1,290,287	-		GFF4360	0.27	+0.6
1,290,403	+		GFF4360	0.37	-0.4
1,290,404	-		GFF4360	0.37	-0.2
1,290,404	-		GFF4360	0.37	+0.0
1,290,404	-		GFF4360	0.37	-1.0