Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4350

Experiment: Ying_sugar7 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 1
1,280,623	+				-0.4
1,280,624	-				-0.2
1,280,624	-				-0.3
1,280,624	-				+0.5
1,280,635	+				-0.5
1,280,635	+				-0.6
1,280,716	+		GFF4349	0.11	-0.1
1,280,717	-		GFF4349	0.12	-1.2
1,280,809	+		GFF4349	0.23	-0.8
1,280,809	+		GFF4349	0.23	-0.4
1,280,809	+		GFF4349	0.23	-0.4
1,280,810	-		GFF4349	0.23	-2.0
1,280,810	-		GFF4349	0.23	+0.1
1,281,022	+		GFF4349	0.49	+0.4
1,281,022	+		GFF4349	0.49	+1.3
1,281,023	-		GFF4349	0.49	-0.1
1,281,611	+		GFF4350	0.29	-0.4
1,281,611	+		GFF4350	0.29	-0.3
1,281,611	+		GFF4350	0.29	+0.0
1,281,611	+		GFF4350	0.29	+0.3
1,281,611	+		GFF4350	0.29	-0.1
1,281,611	+		GFF4350	0.29	-0.1
1,281,612	-		GFF4350	0.29	+0.0
1,281,612	-		GFF4350	0.29	+0.2
1,281,612	-		GFF4350	0.29	+0.2
1,281,612	-		GFF4350	0.29	+1.7
1,281,612	-		GFF4350	0.29	+0.6
1,281,612	-		GFF4350	0.29	-0.1
1,281,945	-				-0.5
1,282,089	+		GFF4351	0.20	+0.4
1,282,089	+		GFF4351	0.20	-0.3
1,282,089	+		GFF4351	0.20	+0.6
1,282,089	+		GFF4351	0.20	-0.9
1,282,089	+		GFF4351	0.20	-0.2
1,282,089	+		GFF4351	0.20	-0.1
1,282,089	+		GFF4351	0.20	+0.3
1,282,090	-		GFF4351	0.20	-0.9
1,282,090	-		GFF4351	0.20	+0.4
1,282,090	-		GFF4351	0.20	+0.0
1,282,092	+		GFF4351	0.21	-0.2
1,282,092	+		GFF4351	0.21	-2.0
1,282,092	+		GFF4351	0.21	-0.6
1,282,093	-		GFF4351	0.21	+0.1
1,282,093	-		GFF4351	0.21	-0.9
1,282,093	-		GFF4351	0.21	-0.2
1,282,093	-		GFF4351	0.21	+0.4
1,282,152	+		GFF4351	0.37	-0.4
1,282,152	+		GFF4351	0.37	-0.2
1,282,152	+		GFF4351	0.37	+0.0
1,282,152	+		GFF4351	0.37	+0.7
1,282,263	+		GFF4351	0.66	+0.0
1,282,263	+		GFF4351	0.66	-2.6
1,282,263	+		GFF4351	0.66	-0.3
1,282,263	+		GFF4351	0.66	-0.4
1,282,263	+		GFF4351	0.66	+0.4
1,282,264	-		GFF4351	0.66	-0.0
1,282,459	-				-0.2
1,282,459	-				-0.0
1,282,640	+		GFF4352	0.32	+0.7