Experiment: Ying_sugar7 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3958 and GFF3959 are separated by 140 nucleotides GFF3959 and GFF3960 overlap by 4 nucleotides GFF3960 and GFF3961 overlap by 4 nucleotides
GFF3958 - Tricarboxylate transport protein TctC, at 872,713 to 873,780
GFF3958
GFF3959 - FIG00986182: hypothetical protein, at 873,921 to 875,276
GFF3959
GFF3960 - putative sugar phosphate isomerase/epimerase, at 875,273 to 876,103
GFF3960
GFF3961 - Tricarboxylate transport membrane protein TctA, at 876,100 to 877,599
GFF3961
Position (kb) 873
874
875
876 Strain fitness (log2 ratio) -1
0
1 at 873.083 kb on + strand, within GFF3958 at 873.083 kb on + strand, within GFF3958 at 873.083 kb on + strand, within GFF3958 at 873.083 kb on + strand, within GFF3958 at 873.084 kb on - strand, within GFF3958 at 873.084 kb on - strand, within GFF3958 at 873.087 kb on - strand, within GFF3958 at 873.609 kb on - strand, within GFF3958 at 873.755 kb on + strand at 873.834 kb on - strand at 873.834 kb on - strand at 873.834 kb on - strand at 873.845 kb on + strand at 874.048 kb on + strand at 874.048 kb on + strand at 874.048 kb on + strand at 874.049 kb on - strand at 874.117 kb on + strand, within GFF3959 at 874.117 kb on + strand, within GFF3959 at 874.273 kb on + strand, within GFF3959 at 874.273 kb on + strand, within GFF3959 at 874.273 kb on + strand, within GFF3959 at 874.274 kb on - strand, within GFF3959 at 874.274 kb on - strand, within GFF3959 at 875.237 kb on - strand at 875.346 kb on + strand at 875.347 kb on - strand at 875.347 kb on - strand at 875.659 kb on - strand, within GFF3960 at 876.024 kb on + strand at 876.134 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 1 remove 873,083 + GFF3958 0.35 -0.2 873,083 + GFF3958 0.35 -0.3 873,083 + GFF3958 0.35 +0.0 873,083 + GFF3958 0.35 +0.0 873,084 - GFF3958 0.35 +0.4 873,084 - GFF3958 0.35 -0.2 873,087 - GFF3958 0.35 +0.1 873,609 - GFF3958 0.84 +0.4 873,755 + +0.5 873,834 - -0.3 873,834 - +0.2 873,834 - +1.1 873,845 + -0.1 874,048 + +0.3 874,048 + +0.2 874,048 + +0.0 874,049 - -0.9 874,117 + GFF3959 0.14 +0.5 874,117 + GFF3959 0.14 -0.3 874,273 + GFF3959 0.26 +0.2 874,273 + GFF3959 0.26 -0.4 874,273 + GFF3959 0.26 +0.4 874,274 - GFF3959 0.26 +1.0 874,274 - GFF3959 0.26 -0.7 875,237 - +0.6 875,346 + -0.1 875,347 - +0.3 875,347 - +0.7 875,659 - GFF3960 0.46 -0.7 876,024 + -0.3 876,134 + +0.8
Or see this region's nucleotide sequence