Experiment: Ying_sugar7 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3908 and GFF3909 are separated by 10 nucleotides GFF3909 and GFF3910 are separated by 79 nucleotides GFF3910 and GFF3911 are separated by 18 nucleotides GFF3911 and GFF3912 are separated by 27 nucleotides
GFF3908 - probable oxidoreductase, at 819,941 to 821,320
GFF3908
GFF3909 - Iron-uptake factor PiuC, at 821,331 to 822,011
GFF3909
GFF3910 - Ferrichrome-iron receptor, at 822,091 to 824,298
GFF3910
GFF3911 - hypothetical protein, at 824,317 to 824,523
GFF3911
GFF3912 - TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins, at 824,551 to 826,971
GFF3912
Position (kb) 822
823
824
825 Strain fitness (log2 ratio) -2
-1
0
1 at 821.130 kb on - strand, within GFF3908 at 821.199 kb on - strand at 821.316 kb on - strand at 821.365 kb on + strand at 821.632 kb on + strand, within GFF3909 at 822.176 kb on + strand at 822.176 kb on + strand at 822.176 kb on + strand at 822.176 kb on + strand at 822.176 kb on + strand at 822.177 kb on - strand at 822.177 kb on - strand at 822.197 kb on + strand at 822.237 kb on - strand at 822.237 kb on - strand at 822.263 kb on + strand at 822.377 kb on + strand, within GFF3910 at 822.590 kb on + strand, within GFF3910 at 822.591 kb on - strand, within GFF3910 at 822.591 kb on - strand, within GFF3910 at 822.788 kb on + strand, within GFF3910 at 822.788 kb on + strand, within GFF3910 at 822.789 kb on - strand, within GFF3910 at 822.815 kb on + strand, within GFF3910 at 822.815 kb on + strand, within GFF3910 at 822.974 kb on + strand, within GFF3910 at 822.975 kb on - strand, within GFF3910 at 823.058 kb on + strand, within GFF3910 at 823.058 kb on + strand, within GFF3910 at 823.059 kb on - strand, within GFF3910 at 823.059 kb on - strand, within GFF3910 at 823.112 kb on + strand, within GFF3910 at 823.112 kb on + strand, within GFF3910 at 823.112 kb on + strand, within GFF3910 at 823.112 kb on + strand, within GFF3910 at 823.113 kb on - strand, within GFF3910 at 823.442 kb on + strand, within GFF3910 at 823.442 kb on + strand, within GFF3910 at 823.443 kb on - strand, within GFF3910 at 823.443 kb on - strand, within GFF3910 at 823.496 kb on + strand, within GFF3910 at 823.496 kb on + strand, within GFF3910 at 823.496 kb on + strand, within GFF3910 at 823.497 kb on - strand, within GFF3910 at 823.565 kb on + strand, within GFF3910 at 823.565 kb on + strand, within GFF3910 at 823.566 kb on - strand, within GFF3910 at 823.566 kb on - strand, within GFF3910 at 823.566 kb on - strand, within GFF3910 at 823.566 kb on - strand, within GFF3910 at 823.622 kb on + strand, within GFF3910 at 824.106 kb on + strand at 824.156 kb on + strand at 824.157 kb on - strand at 824.157 kb on - strand at 824.157 kb on - strand at 824.157 kb on - strand at 824.416 kb on - strand, within GFF3911 at 824.606 kb on + strand at 824.607 kb on - strand at 824.607 kb on - strand at 824.616 kb on - strand at 824.646 kb on - strand at 824.684 kb on + strand at 824.753 kb on + strand at 824.754 kb on - strand at 824.754 kb on - strand at 824.781 kb on - strand at 824.781 kb on - strand at 824.781 kb on - strand at 824.781 kb on - strand at 824.789 kb on + strand at 824.789 kb on + strand at 824.972 kb on + strand, within GFF3912 at 824.972 kb on + strand, within GFF3912 at 824.973 kb on - strand, within GFF3912 at 824.973 kb on - strand, within GFF3912 at 824.973 kb on - strand, within GFF3912 at 824.973 kb on - strand, within GFF3912 at 824.978 kb on + strand, within GFF3912 at 824.978 kb on + strand, within GFF3912 at 824.978 kb on + strand, within GFF3912 at 824.979 kb on - strand, within GFF3912 at 824.979 kb on - strand, within GFF3912 at 824.979 kb on - strand, within GFF3912 at 825.224 kb on + strand, within GFF3912 at 825.225 kb on - strand, within GFF3912 at 825.279 kb on - strand, within GFF3912 at 825.279 kb on - strand, within GFF3912 at 825.279 kb on - strand, within GFF3912
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 1 remove 821,130 - GFF3908 0.86 +0.1 821,199 - +1.2 821,316 - -0.5 821,365 + +0.6 821,632 + GFF3909 0.44 -0.2 822,176 + +0.9 822,176 + -0.7 822,176 + +0.6 822,176 + -0.0 822,176 + -0.2 822,177 - -0.5 822,177 - -0.1 822,197 + -0.9 822,237 - -1.2 822,237 - -0.3 822,263 + +0.1 822,377 + GFF3910 0.13 +0.5 822,590 + GFF3910 0.23 -0.3 822,591 - GFF3910 0.23 -1.6 822,591 - GFF3910 0.23 -0.7 822,788 + GFF3910 0.32 -0.1 822,788 + GFF3910 0.32 -0.0 822,789 - GFF3910 0.32 -0.5 822,815 + GFF3910 0.33 -0.5 822,815 + GFF3910 0.33 -0.9 822,974 + GFF3910 0.40 -0.9 822,975 - GFF3910 0.40 -2.0 823,058 + GFF3910 0.44 -0.5 823,058 + GFF3910 0.44 -0.6 823,059 - GFF3910 0.44 +0.4 823,059 - GFF3910 0.44 -0.4 823,112 + GFF3910 0.46 -1.9 823,112 + GFF3910 0.46 -0.4 823,112 + GFF3910 0.46 -0.2 823,112 + GFF3910 0.46 -0.6 823,113 - GFF3910 0.46 -1.3 823,442 + GFF3910 0.61 -0.4 823,442 + GFF3910 0.61 +0.5 823,443 - GFF3910 0.61 +0.3 823,443 - GFF3910 0.61 +0.4 823,496 + GFF3910 0.64 +1.4 823,496 + GFF3910 0.64 -0.5 823,496 + GFF3910 0.64 +0.5 823,497 - GFF3910 0.64 +0.6 823,565 + GFF3910 0.67 -0.6 823,565 + GFF3910 0.67 -0.1 823,566 - GFF3910 0.67 -1.2 823,566 - GFF3910 0.67 -0.4 823,566 - GFF3910 0.67 -0.8 823,566 - GFF3910 0.67 +0.2 823,622 + GFF3910 0.69 -0.9 824,106 + -0.8 824,156 + -0.1 824,157 - +0.1 824,157 - -1.3 824,157 - -0.1 824,157 - +0.0 824,416 - GFF3911 0.48 +0.5 824,606 + -0.4 824,607 - +0.2 824,607 - -0.0 824,616 - -0.5 824,646 - +0.1 824,684 + -0.3 824,753 + -0.4 824,754 - -0.1 824,754 - +0.7 824,781 - -0.1 824,781 - +1.4 824,781 - +0.7 824,781 - -0.3 824,789 + -0.3 824,789 + -0.4 824,972 + GFF3912 0.17 +0.0 824,972 + GFF3912 0.17 -0.0 824,973 - GFF3912 0.17 -0.2 824,973 - GFF3912 0.17 -1.2 824,973 - GFF3912 0.17 +0.1 824,973 - GFF3912 0.17 +0.0 824,978 + GFF3912 0.18 -1.3 824,978 + GFF3912 0.18 +0.3 824,978 + GFF3912 0.18 +0.2 824,979 - GFF3912 0.18 +0.5 824,979 - GFF3912 0.18 +0.3 824,979 - GFF3912 0.18 -0.9 825,224 + GFF3912 0.28 -0.5 825,225 - GFF3912 0.28 +1.0 825,279 - GFF3912 0.30 -0.4 825,279 - GFF3912 0.30 -0.1 825,279 - GFF3912 0.30 -0.6
Or see this region's nucleotide sequence