Experiment: Ying_sugar7 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3852 and GFF3853 are separated by 275 nucleotides GFF3853 and GFF5788 are separated by 22 nucleotides GFF5788 and GFF3854 are separated by 77 nucleotides GFF3854 and GFF5789 are separated by 36 nucleotides GFF5789 and GFF3855 are separated by 183 nucleotides GFF3855 and GFF3856 are separated by 143 nucleotides
GFF3852 - Tartrate dehydrogenase (EC 1.1.1.93) / Tartrate decarboxylase (EC 4.1.1.73) / D-malic enzyme (EC 1.1.1.83), at 763,168 to 764,259
GFF3852
GFF3853 - DNA-binding protein HU-beta, at 764,535 to 764,807
GFF3853
GFF5788 - tRNA-Val-TAC, at 764,830 to 764,902
GFF5788
GFF3854 - Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8), at 764,980 to 766,899
GFF3854
GFF5789 - tRNA-His-GTG, at 766,936 to 767,008
GFF5789
GFF3855 - hypothetical protein, at 767,192 to 767,494
GFF3855
GFF3856 - Tricarboxylate transport protein TctC, at 767,638 to 768,621
GFF3856
Position (kb) 764
765
766
767 Strain fitness (log2 ratio) -2
-1
0
1
2 at 764.319 kb on + strand at 764.319 kb on + strand at 764.320 kb on - strand at 764.320 kb on - strand at 764.368 kb on + strand at 764.368 kb on + strand at 764.368 kb on + strand at 764.368 kb on + strand at 764.368 kb on + strand at 764.368 kb on + strand at 764.368 kb on + strand at 764.368 kb on + strand at 764.369 kb on - strand at 764.369 kb on - strand at 764.369 kb on - strand at 764.369 kb on - strand at 764.369 kb on - strand at 764.369 kb on - strand at 764.396 kb on + strand at 764.396 kb on + strand at 764.396 kb on + strand at 764.397 kb on - strand at 764.440 kb on + strand at 764.741 kb on + strand, within GFF3853 at 764.837 kb on + strand at 764.837 kb on + strand at 764.837 kb on + strand at 764.837 kb on + strand at 764.837 kb on + strand at 764.838 kb on - strand, within GFF5788 at 764.838 kb on - strand, within GFF5788 at 764.838 kb on - strand, within GFF5788 at 764.863 kb on + strand, within GFF5788 at 764.863 kb on + strand, within GFF5788 at 764.872 kb on + strand, within GFF5788 at 764.872 kb on + strand, within GFF5788 at 764.872 kb on + strand, within GFF5788 at 764.872 kb on + strand, within GFF5788 at 764.873 kb on - strand, within GFF5788 at 764.873 kb on - strand, within GFF5788 at 764.964 kb on + strand at 764.965 kb on - strand at 764.965 kb on - strand at 765.010 kb on + strand at 765.010 kb on + strand at 765.010 kb on + strand at 765.011 kb on - strand at 765.011 kb on - strand at 765.011 kb on - strand at 765.073 kb on + strand at 765.074 kb on - strand at 765.120 kb on - strand at 765.232 kb on + strand, within GFF3854 at 765.298 kb on + strand, within GFF3854 at 765.298 kb on + strand, within GFF3854 at 765.298 kb on + strand, within GFF3854 at 765.298 kb on + strand, within GFF3854 at 765.298 kb on + strand, within GFF3854 at 765.298 kb on + strand, within GFF3854 at 765.299 kb on - strand, within GFF3854 at 765.299 kb on - strand, within GFF3854 at 765.299 kb on - strand, within GFF3854 at 765.631 kb on + strand, within GFF3854 at 765.631 kb on + strand, within GFF3854 at 765.631 kb on + strand, within GFF3854 at 765.631 kb on + strand, within GFF3854 at 765.631 kb on + strand, within GFF3854 at 765.631 kb on + strand, within GFF3854 at 765.631 kb on + strand, within GFF3854 at 765.632 kb on - strand, within GFF3854 at 765.632 kb on - strand, within GFF3854 at 765.632 kb on - strand, within GFF3854 at 765.632 kb on - strand, within GFF3854 at 765.632 kb on - strand, within GFF3854 at 765.632 kb on - strand, within GFF3854 at 765.683 kb on - strand, within GFF3854 at 765.748 kb on + strand, within GFF3854 at 765.748 kb on + strand, within GFF3854 at 765.748 kb on + strand, within GFF3854 at 765.749 kb on - strand, within GFF3854 at 765.749 kb on - strand, within GFF3854 at 765.749 kb on - strand, within GFF3854 at 765.751 kb on + strand, within GFF3854 at 765.752 kb on - strand, within GFF3854 at 765.973 kb on + strand, within GFF3854 at 765.973 kb on + strand, within GFF3854 at 765.973 kb on + strand, within GFF3854 at 765.973 kb on + strand, within GFF3854 at 765.973 kb on + strand, within GFF3854 at 765.974 kb on - strand, within GFF3854 at 765.974 kb on - strand, within GFF3854 at 765.974 kb on - strand, within GFF3854 at 765.974 kb on - strand, within GFF3854 at 765.974 kb on - strand, within GFF3854 at 766.177 kb on + strand, within GFF3854 at 766.213 kb on + strand, within GFF3854 at 766.214 kb on - strand, within GFF3854 at 766.214 kb on - strand, within GFF3854 at 766.214 kb on - strand, within GFF3854 at 766.214 kb on - strand, within GFF3854 at 766.214 kb on - strand, within GFF3854 at 766.705 kb on + strand, within GFF3854 at 766.706 kb on - strand, within GFF3854 at 766.783 kb on + strand at 766.783 kb on + strand at 766.783 kb on + strand at 766.783 kb on + strand at 766.783 kb on + strand at 766.783 kb on + strand at 766.819 kb on + strand at 766.820 kb on - strand at 766.820 kb on - strand at 766.820 kb on - strand at 766.919 kb on - strand at 767.067 kb on + strand at 767.067 kb on + strand at 767.067 kb on + strand at 767.067 kb on + strand at 767.116 kb on + strand at 767.116 kb on + strand at 767.116 kb on + strand at 767.116 kb on + strand at 767.116 kb on + strand at 767.116 kb on + strand at 767.117 kb on - strand at 767.117 kb on - strand at 767.492 kb on + strand at 767.492 kb on + strand at 767.492 kb on + strand at 767.493 kb on - strand at 767.493 kb on - strand at 767.493 kb on - strand at 767.493 kb on - strand at 767.626 kb on - strand at 767.639 kb on + strand at 767.639 kb on + strand at 767.639 kb on + strand at 767.639 kb on + strand at 767.639 kb on + strand at 767.639 kb on + strand at 767.640 kb on - strand at 767.640 kb on - strand at 767.640 kb on - strand at 767.640 kb on - strand at 767.640 kb on - strand at 767.640 kb on - strand at 767.640 kb on - strand at 767.714 kb on + strand at 767.715 kb on - strand at 767.715 kb on - strand at 767.715 kb on - strand at 767.891 kb on + strand, within GFF3856 at 767.892 kb on - strand, within GFF3856 at 767.892 kb on - strand, within GFF3856
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 1 remove 764,319 + -1.8 764,319 + -1.4 764,320 - +0.7 764,320 - +0.3 764,368 + +0.8 764,368 + +0.7 764,368 + +0.8 764,368 + +0.7 764,368 + +0.4 764,368 + +0.5 764,368 + +0.6 764,368 + +1.2 764,369 - +0.4 764,369 - -0.0 764,369 - +0.3 764,369 - +1.3 764,369 - +0.4 764,369 - +0.5 764,396 + +1.0 764,396 + +0.7 764,396 + +0.8 764,397 - +1.0 764,440 + +0.6 764,741 + GFF3853 0.75 +1.0 764,837 + -0.2 764,837 + +0.2 764,837 + +0.6 764,837 + +1.1 764,837 + -0.1 764,838 - GFF5788 0.11 +0.1 764,838 - GFF5788 0.11 -0.2 764,838 - GFF5788 0.11 -0.6 764,863 + GFF5788 0.45 -0.3 764,863 + GFF5788 0.45 -1.4 764,872 + GFF5788 0.58 -0.1 764,872 + GFF5788 0.58 +2.0 764,872 + GFF5788 0.58 -0.6 764,872 + GFF5788 0.58 +0.3 764,873 - GFF5788 0.59 -0.2 764,873 - GFF5788 0.59 +0.0 764,964 + -1.3 764,965 - -1.0 764,965 - +0.6 765,010 + +0.2 765,010 + -1.0 765,010 + +0.5 765,011 - -0.5 765,011 - -0.3 765,011 - -0.6 765,073 + -1.2 765,074 - -1.5 765,120 - -0.6 765,232 + GFF3854 0.13 -0.3 765,298 + GFF3854 0.17 -0.2 765,298 + GFF3854 0.17 -0.5 765,298 + GFF3854 0.17 -0.2 765,298 + GFF3854 0.17 -0.0 765,298 + GFF3854 0.17 -1.3 765,298 + GFF3854 0.17 -1.6 765,299 - GFF3854 0.17 -0.7 765,299 - GFF3854 0.17 -1.2 765,299 - GFF3854 0.17 -0.9 765,631 + GFF3854 0.34 -0.4 765,631 + GFF3854 0.34 -0.2 765,631 + GFF3854 0.34 -0.2 765,631 + GFF3854 0.34 -0.8 765,631 + GFF3854 0.34 -0.4 765,631 + GFF3854 0.34 -0.4 765,631 + GFF3854 0.34 +0.6 765,632 - GFF3854 0.34 -0.5 765,632 - GFF3854 0.34 +1.1 765,632 - GFF3854 0.34 -0.7 765,632 - GFF3854 0.34 -0.3 765,632 - GFF3854 0.34 -0.1 765,632 - GFF3854 0.34 -0.1 765,683 - GFF3854 0.37 +0.3 765,748 + GFF3854 0.40 +1.0 765,748 + GFF3854 0.40 -0.2 765,748 + GFF3854 0.40 -0.4 765,749 - GFF3854 0.40 -0.3 765,749 - GFF3854 0.40 -0.6 765,749 - GFF3854 0.40 +0.2 765,751 + GFF3854 0.40 +0.4 765,752 - GFF3854 0.40 -0.7 765,973 + GFF3854 0.52 +0.2 765,973 + GFF3854 0.52 +0.7 765,973 + GFF3854 0.52 +1.9 765,973 + GFF3854 0.52 -1.0 765,973 + GFF3854 0.52 -0.3 765,974 - GFF3854 0.52 -0.4 765,974 - GFF3854 0.52 -1.1 765,974 - GFF3854 0.52 -1.4 765,974 - GFF3854 0.52 -1.8 765,974 - GFF3854 0.52 -0.5 766,177 + GFF3854 0.62 -0.4 766,213 + GFF3854 0.64 +0.2 766,214 - GFF3854 0.64 -1.3 766,214 - GFF3854 0.64 -0.2 766,214 - GFF3854 0.64 -0.6 766,214 - GFF3854 0.64 +0.7 766,214 - GFF3854 0.64 -0.2 766,705 + GFF3854 0.90 +1.4 766,706 - GFF3854 0.90 -0.2 766,783 + -0.6 766,783 + -0.3 766,783 + +0.7 766,783 + -0.7 766,783 + -0.3 766,783 + +0.3 766,819 + +0.1 766,820 - +0.0 766,820 - -0.1 766,820 - -1.1 766,919 - -0.1 767,067 + +0.1 767,067 + +0.4 767,067 + -1.0 767,067 + -0.1 767,116 + -0.7 767,116 + +0.1 767,116 + +2.4 767,116 + -0.4 767,116 + +0.2 767,116 + -0.3 767,117 - +0.4 767,117 - -1.1 767,492 + -0.8 767,492 + -0.3 767,492 + -0.3 767,493 - +0.4 767,493 - +1.8 767,493 - +1.0 767,493 - -0.1 767,626 - -0.1 767,639 + -0.4 767,639 + +0.9 767,639 + +1.1 767,639 + +0.3 767,639 + -1.0 767,639 + +0.0 767,640 - +0.0 767,640 - -0.2 767,640 - -0.6 767,640 - -1.2 767,640 - -0.0 767,640 - +2.1 767,640 - +1.2 767,714 + -1.0 767,715 - +0.2 767,715 - -0.4 767,715 - +0.1 767,891 + GFF3856 0.26 +0.4 767,892 - GFF3856 0.26 -0.5 767,892 - GFF3856 0.26 +0.2
Or see this region's nucleotide sequence