Experiment: Ying_sugar7 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3791 and GFF3792 are separated by 84 nucleotides GFF3792 and GFF3793 are separated by 20 nucleotides GFF3793 and GFF3794 are separated by 6 nucleotides
GFF3791 - TRAP transporter solute receptor, unknown substrate 3, at 691,221 to 692,354
GFF3791
GFF3792 - TRAP dicarboxylate transporter, DctQ subunit, unknown substrate 3, at 692,439 to 692,942
GFF3792
GFF3793 - TRAP dicarboxylate transporter, DctM subunit, unknown substrate 3, at 692,963 to 694,258
GFF3793
GFF3794 - Tricarboxylate transport protein TctC, at 694,265 to 695,257
GFF3794
Position (kb) 692
693
694
695 Strain fitness (log2 ratio) -2
-1
0
1
2 at 692.028 kb on + strand, within GFF3791 at 692.028 kb on + strand, within GFF3791 at 692.029 kb on - strand, within GFF3791 at 692.029 kb on - strand, within GFF3791 at 692.067 kb on + strand, within GFF3791 at 692.067 kb on + strand, within GFF3791 at 692.068 kb on - strand, within GFF3791 at 692.803 kb on - strand, within GFF3792 at 692.803 kb on - strand, within GFF3792 at 692.803 kb on - strand, within GFF3792 at 692.853 kb on + strand, within GFF3792 at 692.854 kb on - strand, within GFF3792 at 692.854 kb on - strand, within GFF3792 at 692.901 kb on + strand at 692.901 kb on + strand at 692.902 kb on - strand at 692.902 kb on - strand at 693.044 kb on + strand at 693.045 kb on - strand at 693.045 kb on - strand at 693.050 kb on + strand at 693.050 kb on + strand at 693.050 kb on + strand at 693.051 kb on - strand at 693.051 kb on - strand at 693.051 kb on - strand at 693.051 kb on - strand at 693.051 kb on - strand at 693.051 kb on - strand at 693.051 kb on - strand at 693.116 kb on + strand, within GFF3793 at 693.116 kb on + strand, within GFF3793 at 693.116 kb on + strand, within GFF3793 at 693.116 kb on + strand, within GFF3793 at 693.116 kb on + strand, within GFF3793 at 693.117 kb on - strand, within GFF3793 at 693.347 kb on + strand, within GFF3793 at 693.348 kb on - strand, within GFF3793 at 693.348 kb on - strand, within GFF3793 at 693.431 kb on + strand, within GFF3793 at 693.431 kb on + strand, within GFF3793 at 693.431 kb on + strand, within GFF3793 at 693.432 kb on - strand, within GFF3793 at 693.432 kb on - strand, within GFF3793 at 693.509 kb on + strand, within GFF3793 at 693.510 kb on - strand, within GFF3793 at 693.530 kb on + strand, within GFF3793 at 693.530 kb on + strand, within GFF3793 at 693.530 kb on + strand, within GFF3793 at 693.531 kb on - strand, within GFF3793 at 693.531 kb on - strand, within GFF3793 at 693.531 kb on - strand, within GFF3793 at 693.531 kb on - strand, within GFF3793 at 693.653 kb on + strand, within GFF3793 at 693.654 kb on - strand, within GFF3793 at 693.654 kb on - strand, within GFF3793 at 693.764 kb on + strand, within GFF3793 at 693.765 kb on - strand, within GFF3793 at 693.926 kb on + strand, within GFF3793 at 693.926 kb on + strand, within GFF3793 at 693.927 kb on - strand, within GFF3793 at 693.927 kb on - strand, within GFF3793 at 694.112 kb on + strand, within GFF3793 at 694.112 kb on + strand, within GFF3793 at 694.113 kb on - strand, within GFF3793 at 694.113 kb on - strand, within GFF3793 at 694.113 kb on - strand, within GFF3793 at 694.113 kb on - strand, within GFF3793 at 694.113 kb on - strand, within GFF3793 at 694.157 kb on + strand at 694.256 kb on + strand at 694.257 kb on - strand at 694.257 kb on - strand at 694.652 kb on + strand, within GFF3794 at 694.653 kb on - strand, within GFF3794 at 694.653 kb on - strand, within GFF3794 at 694.835 kb on + strand, within GFF3794 at 694.836 kb on - strand, within GFF3794 at 694.836 kb on - strand, within GFF3794 at 694.836 kb on - strand, within GFF3794 at 695.021 kb on + strand, within GFF3794 at 695.021 kb on + strand, within GFF3794 at 695.022 kb on - strand, within GFF3794 at 695.022 kb on - strand, within GFF3794 at 695.022 kb on - strand, within GFF3794 at 695.022 kb on - strand, within GFF3794
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 1 remove 692,028 + GFF3791 0.71 -0.3 692,028 + GFF3791 0.71 +0.2 692,029 - GFF3791 0.71 +0.6 692,029 - GFF3791 0.71 +0.8 692,067 + GFF3791 0.75 -0.9 692,067 + GFF3791 0.75 +0.1 692,068 - GFF3791 0.75 -0.8 692,803 - GFF3792 0.72 -0.2 692,803 - GFF3792 0.72 +0.2 692,803 - GFF3792 0.72 -0.1 692,853 + GFF3792 0.82 -0.3 692,854 - GFF3792 0.82 +0.1 692,854 - GFF3792 0.82 -0.8 692,901 + +0.5 692,901 + +0.4 692,902 - +0.7 692,902 - -0.2 693,044 + -0.1 693,045 - -1.2 693,045 - -0.4 693,050 + +0.7 693,050 + -0.1 693,050 + +0.5 693,051 - -1.4 693,051 - -0.2 693,051 - +0.2 693,051 - +0.3 693,051 - -0.9 693,051 - -0.6 693,051 - -0.9 693,116 + GFF3793 0.12 -0.7 693,116 + GFF3793 0.12 +0.1 693,116 + GFF3793 0.12 -0.3 693,116 + GFF3793 0.12 +0.3 693,116 + GFF3793 0.12 -0.3 693,117 - GFF3793 0.12 -0.7 693,347 + GFF3793 0.30 -0.3 693,348 - GFF3793 0.30 +0.0 693,348 - GFF3793 0.30 +0.0 693,431 + GFF3793 0.36 -0.4 693,431 + GFF3793 0.36 +0.4 693,431 + GFF3793 0.36 -0.2 693,432 - GFF3793 0.36 +1.8 693,432 - GFF3793 0.36 -0.1 693,509 + GFF3793 0.42 -0.1 693,510 - GFF3793 0.42 -0.2 693,530 + GFF3793 0.44 -0.1 693,530 + GFF3793 0.44 -0.1 693,530 + GFF3793 0.44 +1.0 693,531 - GFF3793 0.44 +0.4 693,531 - GFF3793 0.44 -0.3 693,531 - GFF3793 0.44 -1.4 693,531 - GFF3793 0.44 +0.0 693,653 + GFF3793 0.53 -1.7 693,654 - GFF3793 0.53 +1.2 693,654 - GFF3793 0.53 -1.3 693,764 + GFF3793 0.62 -0.5 693,765 - GFF3793 0.62 -0.7 693,926 + GFF3793 0.74 -0.5 693,926 + GFF3793 0.74 -0.0 693,927 - GFF3793 0.74 +0.3 693,927 - GFF3793 0.74 +0.1 694,112 + GFF3793 0.89 +0.8 694,112 + GFF3793 0.89 +0.2 694,113 - GFF3793 0.89 +0.9 694,113 - GFF3793 0.89 -0.9 694,113 - GFF3793 0.89 +0.8 694,113 - GFF3793 0.89 -0.1 694,113 - GFF3793 0.89 +0.9 694,157 + -1.3 694,256 + -0.3 694,257 - -0.2 694,257 - +0.4 694,652 + GFF3794 0.39 +0.1 694,653 - GFF3794 0.39 -1.4 694,653 - GFF3794 0.39 +0.0 694,835 + GFF3794 0.57 +0.3 694,836 - GFF3794 0.58 -1.4 694,836 - GFF3794 0.58 +0.4 694,836 - GFF3794 0.58 +0.1 695,021 + GFF3794 0.76 -0.6 695,021 + GFF3794 0.76 -0.6 695,022 - GFF3794 0.76 -0.1 695,022 - GFF3794 0.76 -0.0 695,022 - GFF3794 0.76 +0.3 695,022 - GFF3794 0.76 -1.8
Or see this region's nucleotide sequence