Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF378

Experiment: Ying_sugar7 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 1
40,949	-		GFF377	0.67	-2.4
41,183	+		GFF377	0.81	+0.5
41,218	+		GFF377	0.83	+0.6
41,218	+		GFF377	0.83	+1.1
41,218	+		GFF377	0.83	+0.4
41,403	+				+0.1
41,403	+				+0.1
41,404	-				+0.3
41,404	-				+0.6
41,404	-				+0.3
41,404	-				-0.1
41,515	+				+0.8
41,515	+				-0.1
41,515	+				+0.2
41,515	+				-1.1
41,515	+				+0.3
41,515	+				+0.2
41,515	+				-0.2
41,515	+				-0.1
41,515	+				-0.7
41,516	-				+1.3
41,516	-				+0.0
41,516	-				+0.5
41,516	-				+0.1
41,516	-				+0.8
41,516	-				-1.7
41,516	-				-0.0
41,516	-				-0.2
41,516	-				+0.7
41,516	-				+0.1
41,516	-				-0.2
41,516	-				-0.4
41,760	+		GFF378	0.38	+0.6
41,761	-		GFF378	0.38	-0.1
41,796	+		GFF378	0.50	+0.5
41,796	+		GFF378	0.50	-0.4
41,796	+		GFF378	0.50	+0.3
41,796	+		GFF378	0.50	+0.1
41,797	-		GFF378	0.50	+0.3
41,797	-		GFF378	0.50	+1.2
41,797	-		GFF378	0.50	-0.0
41,991	-				+0.4
42,317	-		GFF379	0.35	+0.1
42,317	-		GFF379	0.35	-0.9
42,317	-		GFF379	0.35	+0.8