Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3

Experiment: Ying_sugar7 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2 and GFF3 are separated by 347 nucleotidesGFF3 and GFF4 are separated by 602 nucleotidesGFF4 and GFF5 are separated by 7 nucleotides GFF2 - hypothetical protein, at 190 to 966 GFF2 GFF3 - hypothetical protein, at 1,314 to 1,637 GFF3 GFF4 - hypothetical protein, at 2,240 to 2,356 GFF4 GFF5 - Transcriptional regulator, LysR family, at 2,364 to 3,236 GFF5 Position (kb) 1 2Strain fitness (log2 ratio) -2 -1 0 1 2at 0.341 kb on + strand, within GFF2at 0.341 kb on + strand, within GFF2at 0.342 kb on - strand, within GFF2at 0.342 kb on - strand, within GFF2at 0.389 kb on + strand, within GFF2at 0.389 kb on + strand, within GFF2at 0.390 kb on - strand, within GFF2at 0.390 kb on - strand, within GFF2at 0.390 kb on - strand, within GFF2at 0.390 kb on - strand, within GFF2at 0.993 kb on + strandat 0.993 kb on + strandat 0.993 kb on + strandat 0.993 kb on + strandat 0.993 kb on + strandat 0.994 kb on - strandat 0.994 kb on - strandat 0.994 kb on - strandat 0.994 kb on - strandat 1.149 kb on + strandat 1.149 kb on + strandat 1.150 kb on - strandat 1.150 kb on - strandat 1.390 kb on + strand, within GFF3at 1.390 kb on + strand, within GFF3at 1.391 kb on - strand, within GFF3at 1.407 kb on + strand, within GFF3at 1.407 kb on + strand, within GFF3at 1.407 kb on + strand, within GFF3at 1.408 kb on - strand, within GFF3at 1.408 kb on - strand, within GFF3at 1.408 kb on - strand, within GFF3at 1.408 kb on - strand, within GFF3at 1.408 kb on - strand, within GFF3at 1.476 kb on + strand, within GFF3at 1.476 kb on + strand, within GFF3at 1.509 kb on + strand, within GFF3at 1.509 kb on + strand, within GFF3at 1.509 kb on + strand, within GFF3at 1.509 kb on + strand, within GFF3at 1.510 kb on - strand, within GFF3at 1.510 kb on - strand, within GFF3at 1.510 kb on - strand, within GFF3at 1.510 kb on - strand, within GFF3at 1.510 kb on - strand, within GFF3at 1.510 kb on - strand, within GFF3at 1.510 kb on - strand, within GFF3at 1.560 kb on + strand, within GFF3at 1.561 kb on - strand, within GFF3at 1.561 kb on - strand, within GFF3at 1.561 kb on - strand, within GFF3at 1.786 kb on + strandat 1.787 kb on - strandat 1.871 kb on - strandat 2.067 kb on + strandat 2.105 kb on - strandat 2.149 kb on - strandat 2.309 kb on + strand, within GFF4at 2.458 kb on + strand, within GFF5at 2.458 kb on + strand, within GFF5at 2.458 kb on + strand, within GFF5at 2.458 kb on + strand, within GFF5at 2.458 kb on + strand, within GFF5at 2.458 kb on + strand, within GFF5at 2.458 kb on + strand, within GFF5at 2.458 kb on + strand, within GFF5at 2.458 kb on + strand, within GFF5at 2.458 kb on + strand, within GFF5at 2.458 kb on + strand, within GFF5at 2.458 kb on + strand, within GFF5at 2.459 kb on - strand, within GFF5at 2.459 kb on - strand, within GFF5at 2.459 kb on - strand, within GFF5at 2.459 kb on - strand, within GFF5at 2.459 kb on - strand, within GFF5at 2.459 kb on - strand, within GFF5at 2.459 kb on - strand, within GFF5at 2.459 kb on - strand, within GFF5at 2.459 kb on - strand, within GFF5at 2.459 kb on - strand, within GFF5at 2.459 kb on - strand, within GFF5at 2.459 kb on - strand, within GFF5at 2.459 kb on - strand, within GFF5at 2.459 kb on - strand, within GFF5at 2.599 kb on + strand, within GFF5at 2.599 kb on + strand, within GFF5at 2.599 kb on + strand, within GFF5at 2.599 kb on + strand, within GFF5at 2.599 kb on + strand, within GFF5at 2.599 kb on + strand, within GFF5at 2.599 kb on + strand, within GFF5at 2.600 kb on - strand, within GFF5at 2.600 kb on - strand, within GFF5at 2.600 kb on - strand, within GFF5at 2.600 kb on - strand, within GFF5at 2.600 kb on - strand, within GFF5at 2.600 kb on - strand, within GFF5at 2.600 kb on - strand, within GFF5at 2.600 kb on - strand, within GFF5at 2.600 kb on - strand, within GFF5at 2.600 kb on - strand, within GFF5at 2.600 kb on - strand, within GFF5at 2.600 kb on - strand, within GFF5

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 1
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341 + GFF2 0.19 +0.0
341 + GFF2 0.19 +0.0
342 - GFF2 0.20 +0.4
342 - GFF2 0.20 +1.4
389 + GFF2 0.26 -0.3
389 + GFF2 0.26 -0.3
390 - GFF2 0.26 -1.5
390 - GFF2 0.26 +0.3
390 - GFF2 0.26 -0.6
390 - GFF2 0.26 -0.0
993 + -0.2
993 + -0.3
993 + +0.4
993 + -0.1
993 + -0.2
994 - +0.3
994 - +0.7
994 - +0.5
994 - +0.5
1,149 + +0.4
1,149 + +0.1
1,150 - +0.4
1,150 - +0.2
1,390 + GFF3 0.23 -0.3
1,390 + GFF3 0.23 -0.4
1,391 - GFF3 0.24 -0.1
1,407 + GFF3 0.29 -0.9
1,407 + GFF3 0.29 +0.1
1,407 + GFF3 0.29 -0.3
1,408 - GFF3 0.29 -0.0
1,408 - GFF3 0.29 -0.4
1,408 - GFF3 0.29 -0.2
1,408 - GFF3 0.29 -0.1
1,408 - GFF3 0.29 -0.0
1,476 + GFF3 0.50 -1.1
1,476 + GFF3 0.50 -0.3
1,509 + GFF3 0.60 -0.4
1,509 + GFF3 0.60 -0.9
1,509 + GFF3 0.60 +0.1
1,509 + GFF3 0.60 -0.0
1,510 - GFF3 0.60 +2.0
1,510 - GFF3 0.60 +0.2
1,510 - GFF3 0.60 +0.1
1,510 - GFF3 0.60 +0.1
1,510 - GFF3 0.60 -0.0
1,510 - GFF3 0.60 +0.4
1,510 - GFF3 0.60 -0.2
1,560 + GFF3 0.76 -0.3
1,561 - GFF3 0.76 +1.4
1,561 - GFF3 0.76 +0.8
1,561 - GFF3 0.76 +0.2
1,786 + +0.2
1,787 - +0.3
1,871 - -1.2
2,067 + -0.1
2,105 - +0.1
2,149 - -0.3
2,309 + GFF4 0.59 +0.5
2,458 + GFF5 0.11 +0.1
2,458 + GFF5 0.11 +0.3
2,458 + GFF5 0.11 +0.1
2,458 + GFF5 0.11 +0.8
2,458 + GFF5 0.11 +0.5
2,458 + GFF5 0.11 +0.0
2,458 + GFF5 0.11 -0.2
2,458 + GFF5 0.11 +1.1
2,458 + GFF5 0.11 -0.4
2,458 + GFF5 0.11 +0.6
2,458 + GFF5 0.11 -0.1
2,458 + GFF5 0.11 -0.3
2,459 - GFF5 0.11 -0.4
2,459 - GFF5 0.11 -0.1
2,459 - GFF5 0.11 -0.4
2,459 - GFF5 0.11 -0.1
2,459 - GFF5 0.11 -0.4
2,459 - GFF5 0.11 -0.2
2,459 - GFF5 0.11 +1.6
2,459 - GFF5 0.11 -0.3
2,459 - GFF5 0.11 +1.0
2,459 - GFF5 0.11 +0.0
2,459 - GFF5 0.11 +0.6
2,459 - GFF5 0.11 -0.0
2,459 - GFF5 0.11 -0.3
2,459 - GFF5 0.11 -0.4
2,599 + GFF5 0.27 -0.9
2,599 + GFF5 0.27 -1.9
2,599 + GFF5 0.27 +0.3
2,599 + GFF5 0.27 -1.6
2,599 + GFF5 0.27 +0.3
2,599 + GFF5 0.27 +0.3
2,599 + GFF5 0.27 +0.0
2,600 - GFF5 0.27 -0.2
2,600 - GFF5 0.27 +0.7
2,600 - GFF5 0.27 +0.6
2,600 - GFF5 0.27 -0.5
2,600 - GFF5 0.27 +1.0
2,600 - GFF5 0.27 -0.1
2,600 - GFF5 0.27 -0.8
2,600 - GFF5 0.27 +0.0
2,600 - GFF5 0.27 +0.1
2,600 - GFF5 0.27 -0.7
2,600 - GFF5 0.27 +0.2
2,600 - GFF5 0.27 -1.1

Or see this region's nucleotide sequence