Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2846

Experiment: Ying_sugar7 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2844 and GFF2845 are separated by 6 nucleotidesGFF2845 and GFF2846 are separated by 66 nucleotidesGFF2846 and GFF2847 are separated by 207 nucleotidesGFF2847 and GFF2848 overlap by 1 nucleotidesGFF2848 and GFF2849 are separated by 57 nucleotides GFF2844 - LysR family transcriptional regulator PA2758, at 435,300 to 436,199 GFF2844 GFF2845 - hypothetical protein, at 436,206 to 436,409 GFF2845 GFF2846 - Transcriptional regulator, AraC family, at 436,476 to 437,441 GFF2846 GFF2847 - hypothetical protein, at 437,649 to 437,810 GFF2847 GFF2848 - hypothetical protein, at 437,810 to 437,953 GFF2848 GFF2849 - Type IV pilin PilA, at 438,011 to 438,862 GFF2849 Position (kb) 436 437 438Strain fitness (log2 ratio) -2 -1 0 1 2at 436.011 kb on + strand, within GFF2844at 436.011 kb on + strand, within GFF2844at 436.403 kb on + strandat 436.443 kb on + strandat 436.443 kb on + strandat 436.443 kb on + strandat 436.443 kb on + strandat 436.443 kb on + strandat 436.444 kb on - strandat 436.511 kb on - strandat 436.511 kb on - strandat 436.529 kb on + strandat 436.531 kb on + strandat 436.532 kb on - strandat 436.532 kb on - strandat 436.532 kb on - strandat 436.532 kb on - strandat 436.648 kb on + strand, within GFF2846at 436.649 kb on - strand, within GFF2846at 436.649 kb on - strand, within GFF2846at 437.188 kb on + strand, within GFF2846at 437.188 kb on + strand, within GFF2846at 437.188 kb on + strand, within GFF2846at 437.188 kb on + strand, within GFF2846at 437.188 kb on + strand, within GFF2846at 437.189 kb on - strand, within GFF2846at 437.189 kb on - strand, within GFF2846at 437.189 kb on - strand, within GFF2846at 437.189 kb on - strand, within GFF2846at 437.189 kb on - strand, within GFF2846at 437.189 kb on - strand, within GFF2846at 437.194 kb on + strand, within GFF2846at 437.194 kb on + strand, within GFF2846at 437.194 kb on + strand, within GFF2846at 437.194 kb on + strand, within GFF2846at 437.194 kb on + strand, within GFF2846at 437.194 kb on + strand, within GFF2846at 437.194 kb on + strand, within GFF2846at 437.194 kb on + strand, within GFF2846at 437.194 kb on + strand, within GFF2846at 437.194 kb on + strand, within GFF2846at 437.195 kb on - strand, within GFF2846at 437.195 kb on - strand, within GFF2846at 437.195 kb on - strand, within GFF2846at 437.195 kb on - strand, within GFF2846at 437.195 kb on - strand, within GFF2846at 437.195 kb on - strand, within GFF2846at 437.195 kb on - strand, within GFF2846at 437.195 kb on - strand, within GFF2846at 437.195 kb on - strand, within GFF2846at 437.195 kb on - strand, within GFF2846at 437.195 kb on - strand, within GFF2846at 437.195 kb on - strand, within GFF2846at 437.195 kb on - strand, within GFF2846at 437.195 kb on - strand, within GFF2846at 437.197 kb on + strand, within GFF2846at 437.197 kb on + strand, within GFF2846at 437.197 kb on + strand, within GFF2846at 437.197 kb on + strand, within GFF2846at 437.197 kb on + strand, within GFF2846at 437.197 kb on + strand, within GFF2846at 437.197 kb on + strand, within GFF2846at 437.197 kb on + strand, within GFF2846at 437.198 kb on - strand, within GFF2846at 437.198 kb on - strand, within GFF2846at 437.198 kb on - strand, within GFF2846at 437.198 kb on - strand, within GFF2846at 437.198 kb on - strand, within GFF2846at 437.198 kb on - strand, within GFF2846at 437.198 kb on - strand, within GFF2846at 437.198 kb on - strand, within GFF2846at 437.241 kb on + strand, within GFF2846at 437.242 kb on - strand, within GFF2846at 437.242 kb on - strand, within GFF2846at 437.242 kb on - strand, within GFF2846at 437.242 kb on - strand, within GFF2846at 437.242 kb on - strand, within GFF2846at 437.242 kb on - strand, within GFF2846at 437.359 kb on + strandat 437.359 kb on + strandat 437.359 kb on + strandat 437.360 kb on - strandat 437.360 kb on - strandat 437.360 kb on - strandat 437.360 kb on - strandat 437.360 kb on - strandat 437.360 kb on - strandat 437.477 kb on - strandat 437.477 kb on - strandat 437.515 kb on + strandat 437.773 kb on + strand, within GFF2847at 437.773 kb on + strand, within GFF2847at 437.773 kb on + strand, within GFF2847at 437.773 kb on + strand, within GFF2847at 437.811 kb on + strandat 437.812 kb on - strandat 437.812 kb on - strandat 437.830 kb on - strand, within GFF2848at 437.830 kb on - strand, within GFF2848at 438.155 kb on + strand, within GFF2849at 438.155 kb on + strand, within GFF2849at 438.155 kb on + strand, within GFF2849at 438.155 kb on + strand, within GFF2849at 438.155 kb on + strand, within GFF2849at 438.156 kb on - strand, within GFF2849at 438.156 kb on - strand, within GFF2849at 438.156 kb on - strand, within GFF2849at 438.200 kb on + strand, within GFF2849at 438.200 kb on + strand, within GFF2849at 438.201 kb on - strand, within GFF2849at 438.201 kb on - strand, within GFF2849at 438.201 kb on - strand, within GFF2849at 438.299 kb on + strand, within GFF2849at 438.299 kb on + strand, within GFF2849at 438.299 kb on + strand, within GFF2849at 438.299 kb on + strand, within GFF2849at 438.300 kb on - strand, within GFF2849at 438.300 kb on - strand, within GFF2849at 438.300 kb on - strand, within GFF2849at 438.351 kb on - strand, within GFF2849at 438.351 kb on - strand, within GFF2849at 438.359 kb on + strand, within GFF2849at 438.359 kb on + strand, within GFF2849at 438.359 kb on + strand, within GFF2849at 438.360 kb on - strand, within GFF2849at 438.360 kb on - strand, within GFF2849at 438.419 kb on + strand, within GFF2849at 438.419 kb on + strand, within GFF2849at 438.419 kb on + strand, within GFF2849at 438.420 kb on - strand, within GFF2849at 438.420 kb on - strand, within GFF2849at 438.420 kb on - strand, within GFF2849at 438.420 kb on - strand, within GFF2849

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 1
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436,011 + GFF2844 0.79 +0.0
436,011 + GFF2844 0.79 +0.2
436,403 + -0.2
436,443 + +0.2
436,443 + +0.5
436,443 + +0.9
436,443 + +0.8
436,443 + +0.1
436,444 - -0.1
436,511 - +0.1
436,511 - -1.0
436,529 + +0.2
436,531 + +0.0
436,532 - -0.5
436,532 - -0.3
436,532 - -0.6
436,532 - -0.2
436,648 + GFF2846 0.18 +0.4
436,649 - GFF2846 0.18 +0.2
436,649 - GFF2846 0.18 -0.1
437,188 + GFF2846 0.74 -0.4
437,188 + GFF2846 0.74 -0.2
437,188 + GFF2846 0.74 +0.3
437,188 + GFF2846 0.74 -0.8
437,188 + GFF2846 0.74 +1.6
437,189 - GFF2846 0.74 +0.4
437,189 - GFF2846 0.74 +0.1
437,189 - GFF2846 0.74 -0.4
437,189 - GFF2846 0.74 +0.1
437,189 - GFF2846 0.74 +1.4
437,189 - GFF2846 0.74 -0.4
437,194 + GFF2846 0.74 +0.9
437,194 + GFF2846 0.74 -0.2
437,194 + GFF2846 0.74 +0.8
437,194 + GFF2846 0.74 -0.3
437,194 + GFF2846 0.74 -0.2
437,194 + GFF2846 0.74 -0.9
437,194 + GFF2846 0.74 -0.8
437,194 + GFF2846 0.74 -0.0
437,194 + GFF2846 0.74 +0.1
437,194 + GFF2846 0.74 +1.6
437,195 - GFF2846 0.74 +0.9
437,195 - GFF2846 0.74 +0.3
437,195 - GFF2846 0.74 +0.5
437,195 - GFF2846 0.74 +0.2
437,195 - GFF2846 0.74 -1.5
437,195 - GFF2846 0.74 -0.3
437,195 - GFF2846 0.74 -0.0
437,195 - GFF2846 0.74 -0.6
437,195 - GFF2846 0.74 -0.6
437,195 - GFF2846 0.74 -0.2
437,195 - GFF2846 0.74 +0.4
437,195 - GFF2846 0.74 +2.0
437,195 - GFF2846 0.74 +0.7
437,195 - GFF2846 0.74 -0.1
437,197 + GFF2846 0.75 +0.5
437,197 + GFF2846 0.75 -0.4
437,197 + GFF2846 0.75 +0.1
437,197 + GFF2846 0.75 +0.4
437,197 + GFF2846 0.75 -0.2
437,197 + GFF2846 0.75 +0.3
437,197 + GFF2846 0.75 +0.1
437,197 + GFF2846 0.75 -2.1
437,198 - GFF2846 0.75 +0.8
437,198 - GFF2846 0.75 +0.9
437,198 - GFF2846 0.75 +0.8
437,198 - GFF2846 0.75 -0.6
437,198 - GFF2846 0.75 +0.8
437,198 - GFF2846 0.75 +0.0
437,198 - GFF2846 0.75 -0.1
437,198 - GFF2846 0.75 -0.5
437,241 + GFF2846 0.79 -0.1
437,242 - GFF2846 0.79 +0.3
437,242 - GFF2846 0.79 -0.3
437,242 - GFF2846 0.79 -0.4
437,242 - GFF2846 0.79 +0.2
437,242 - GFF2846 0.79 +0.4
437,242 - GFF2846 0.79 +0.1
437,359 + -1.4
437,359 + +0.2
437,359 + -0.1
437,360 - +1.7
437,360 - -0.1
437,360 - -0.5
437,360 - -1.1
437,360 - -0.0
437,360 - -0.2
437,477 - -1.8
437,477 - -0.4
437,515 + +1.2
437,773 + GFF2847 0.77 +0.5
437,773 + GFF2847 0.77 -0.0
437,773 + GFF2847 0.77 +0.4
437,773 + GFF2847 0.77 +0.7
437,811 + +0.5
437,812 - +0.5
437,812 - +0.4
437,830 - GFF2848 0.14 -0.7
437,830 - GFF2848 0.14 -0.8
438,155 + GFF2849 0.17 +0.1
438,155 + GFF2849 0.17 -0.2
438,155 + GFF2849 0.17 -0.6
438,155 + GFF2849 0.17 -0.1
438,155 + GFF2849 0.17 +0.3
438,156 - GFF2849 0.17 +0.2
438,156 - GFF2849 0.17 +0.4
438,156 - GFF2849 0.17 +0.2
438,200 + GFF2849 0.22 +0.0
438,200 + GFF2849 0.22 +0.9
438,201 - GFF2849 0.22 -0.0
438,201 - GFF2849 0.22 +0.1
438,201 - GFF2849 0.22 +0.1
438,299 + GFF2849 0.34 -0.5
438,299 + GFF2849 0.34 -0.2
438,299 + GFF2849 0.34 -0.6
438,299 + GFF2849 0.34 -0.0
438,300 - GFF2849 0.34 -0.4
438,300 - GFF2849 0.34 -0.4
438,300 - GFF2849 0.34 -0.4
438,351 - GFF2849 0.40 -1.8
438,351 - GFF2849 0.40 -0.8
438,359 + GFF2849 0.41 -0.5
438,359 + GFF2849 0.41 +0.2
438,359 + GFF2849 0.41 -0.6
438,360 - GFF2849 0.41 +0.7
438,360 - GFF2849 0.41 +0.4
438,419 + GFF2849 0.48 +0.6
438,419 + GFF2849 0.48 +0.0
438,419 + GFF2849 0.48 +0.6
438,420 - GFF2849 0.48 -0.9
438,420 - GFF2849 0.48 -0.0
438,420 - GFF2849 0.48 -0.4
438,420 - GFF2849 0.48 -0.5

Or see this region's nucleotide sequence