Experiment: Ying_sugar7 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2689 and GFF2690 are separated by 3 nucleotides GFF2690 and GFF2691 overlap by 38 nucleotides GFF2691 and GFF2692 are separated by 10 nucleotides GFF2692 and GFF2693 are separated by 31 nucleotides
GFF2689 - Glycine betaine transporter OpuD, at 279,879 to 281,393
GFF2689
GFF2690 - Multiple antibiotic resistance protein marC, at 281,397 to 282,080
GFF2690
GFF2691 - Glutathione S-transferase domain protein, at 282,043 to 282,717
GFF2691
GFF2692 - hypothetical protein, at 282,728 to 283,021
GFF2692
GFF2693 - Acetyltransferase (EC 2.3.1.-), at 283,053 to 283,340
GFF2693
Position (kb) 281
282
283 Strain fitness (log2 ratio) -1
0
1 at 280.717 kb on - strand, within GFF2689 at 280.797 kb on + strand, within GFF2689 at 280.797 kb on + strand, within GFF2689 at 281.602 kb on - strand, within GFF2690 at 281.769 kb on + strand, within GFF2690 at 281.919 kb on + strand, within GFF2690 at 282.389 kb on + strand, within GFF2691 at 282.389 kb on + strand, within GFF2691 at 282.389 kb on + strand, within GFF2691 at 282.389 kb on + strand, within GFF2691 at 282.390 kb on - strand, within GFF2691 at 282.680 kb on + strand at 282.681 kb on - strand at 282.696 kb on - strand at 282.701 kb on + strand at 282.702 kb on - strand at 282.702 kb on - strand at 282.702 kb on - strand at 282.930 kb on + strand, within GFF2692 at 282.930 kb on + strand, within GFF2692 at 282.930 kb on + strand, within GFF2692 at 282.930 kb on + strand, within GFF2692 at 282.930 kb on + strand, within GFF2692 at 282.931 kb on - strand, within GFF2692
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 1 remove 280,717 - GFF2689 0.55 -1.3 280,797 + GFF2689 0.61 +0.6 280,797 + GFF2689 0.61 +0.3 281,602 - GFF2690 0.30 -1.1 281,769 + GFF2690 0.54 -0.4 281,919 + GFF2690 0.76 -1.1 282,389 + GFF2691 0.51 +0.4 282,389 + GFF2691 0.51 +0.8 282,389 + GFF2691 0.51 +0.4 282,389 + GFF2691 0.51 -0.4 282,390 - GFF2691 0.51 +0.3 282,680 + -0.4 282,681 - +0.2 282,696 - -0.1 282,701 + +0.7 282,702 - -1.4 282,702 - -0.1 282,702 - +0.1 282,930 + GFF2692 0.69 -0.3 282,930 + GFF2692 0.69 +0.5 282,930 + GFF2692 0.69 -0.4 282,930 + GFF2692 0.69 +0.7 282,930 + GFF2692 0.69 +0.2 282,931 - GFF2692 0.69 +0.4
Or see this region's nucleotide sequence