Experiment: Ying_sugar7 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF255 and GFF256 are separated by 14 nucleotides GFF256 and GFF257 are separated by 133 nucleotides
GFF255 - MFS permease, at 270,903 to 272,153
GFF255
GFF256 - hypothetical protein, at 272,168 to 272,389
GFF256
GFF257 - Sulfur oxidation molybdopterin C protein, at 272,523 to 273,866
GFF257
Position (kb) 272
273 Strain fitness (log2 ratio) -1
0
1 at 271.449 kb on + strand, within GFF255 at 271.449 kb on + strand, within GFF255 at 271.449 kb on + strand, within GFF255 at 271.449 kb on + strand, within GFF255 at 271.450 kb on - strand, within GFF255 at 271.659 kb on + strand, within GFF255 at 271.830 kb on + strand, within GFF255 at 272.299 kb on - strand, within GFF256 at 272.299 kb on - strand, within GFF256 at 272.299 kb on - strand, within GFF256 at 272.319 kb on + strand, within GFF256 at 272.320 kb on - strand, within GFF256 at 272.320 kb on - strand, within GFF256 at 272.320 kb on - strand, within GFF256 at 272.321 kb on + strand, within GFF256 at 272.341 kb on - strand, within GFF256 at 272.341 kb on - strand, within GFF256 at 272.361 kb on + strand, within GFF256 at 272.361 kb on + strand, within GFF256 at 272.361 kb on + strand, within GFF256 at 272.361 kb on + strand, within GFF256 at 272.361 kb on + strand, within GFF256 at 272.362 kb on - strand, within GFF256 at 272.362 kb on - strand, within GFF256 at 272.387 kb on + strand at 272.387 kb on + strand at 272.387 kb on + strand at 272.387 kb on + strand at 272.387 kb on + strand at 272.387 kb on + strand at 272.387 kb on + strand at 272.387 kb on + strand at 272.387 kb on + strand at 272.387 kb on + strand at 272.387 kb on + strand at 272.388 kb on - strand at 272.388 kb on - strand at 272.388 kb on - strand at 272.441 kb on + strand at 272.441 kb on + strand at 272.467 kb on - strand at 272.467 kb on - strand at 272.467 kb on - strand at 272.468 kb on + strand at 272.468 kb on + strand at 272.468 kb on + strand at 272.468 kb on + strand at 272.468 kb on + strand at 272.468 kb on + strand at 272.468 kb on + strand at 272.469 kb on - strand at 272.469 kb on - strand at 272.469 kb on - strand at 272.469 kb on - strand at 272.469 kb on - strand at 272.469 kb on - strand at 272.772 kb on + strand, within GFF257 at 272.773 kb on - strand, within GFF257 at 273.105 kb on + strand, within GFF257 at 273.105 kb on + strand, within GFF257 at 273.105 kb on + strand, within GFF257 at 273.106 kb on - strand, within GFF257 at 273.106 kb on - strand, within GFF257 at 273.106 kb on - strand, within GFF257 at 273.198 kb on + strand, within GFF257 at 273.198 kb on + strand, within GFF257 at 273.198 kb on + strand, within GFF257 at 273.198 kb on + strand, within GFF257 at 273.198 kb on + strand, within GFF257 at 273.198 kb on + strand, within GFF257 at 273.199 kb on - strand, within GFF257 at 273.199 kb on - strand, within GFF257 at 273.199 kb on - strand, within GFF257 at 273.199 kb on - strand, within GFF257 at 273.199 kb on - strand, within GFF257 at 273.199 kb on - strand, within GFF257 at 273.199 kb on - strand, within GFF257 at 273.199 kb on - strand, within GFF257 at 273.199 kb on - strand, within GFF257 at 273.199 kb on - strand, within GFF257 at 273.199 kb on - strand, within GFF257 at 273.199 kb on - strand, within GFF257 at 273.372 kb on + strand, within GFF257 at 273.372 kb on + strand, within GFF257 at 273.373 kb on - strand, within GFF257 at 273.373 kb on - strand, within GFF257
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 1 remove 271,449 + GFF255 0.44 -0.6 271,449 + GFF255 0.44 -0.2 271,449 + GFF255 0.44 -0.2 271,449 + GFF255 0.44 -0.0 271,450 - GFF255 0.44 +0.1 271,659 + GFF255 0.60 +1.2 271,830 + GFF255 0.74 -0.6 272,299 - GFF256 0.59 +0.2 272,299 - GFF256 0.59 +0.1 272,299 - GFF256 0.59 -0.6 272,319 + GFF256 0.68 +0.1 272,320 - GFF256 0.68 +0.1 272,320 - GFF256 0.68 +0.1 272,320 - GFF256 0.68 +0.5 272,321 + GFF256 0.69 +0.4 272,341 - GFF256 0.78 +0.3 272,341 - GFF256 0.78 -0.2 272,361 + GFF256 0.87 -0.0 272,361 + GFF256 0.87 +0.2 272,361 + GFF256 0.87 +0.0 272,361 + GFF256 0.87 +0.8 272,361 + GFF256 0.87 +0.6 272,362 - GFF256 0.87 -0.1 272,362 - GFF256 0.87 -1.0 272,387 + +0.1 272,387 + -0.7 272,387 + -0.2 272,387 + -1.2 272,387 + +0.2 272,387 + -0.5 272,387 + -0.3 272,387 + +0.4 272,387 + +0.0 272,387 + +0.1 272,387 + +1.1 272,388 - +1.1 272,388 - -0.5 272,388 - -0.2 272,441 + +0.4 272,441 + -0.1 272,467 - -0.1 272,467 - -0.4 272,467 - +0.3 272,468 + +1.4 272,468 + -0.6 272,468 + +0.2 272,468 + +0.1 272,468 + -0.6 272,468 + +0.1 272,468 + +0.2 272,469 - +0.3 272,469 - -1.1 272,469 - +0.2 272,469 - +0.4 272,469 - -0.0 272,469 - +0.1 272,772 + GFF257 0.19 +0.1 272,773 - GFF257 0.19 +0.6 273,105 + GFF257 0.43 +0.3 273,105 + GFF257 0.43 +0.1 273,105 + GFF257 0.43 -0.1 273,106 - GFF257 0.43 +1.7 273,106 - GFF257 0.43 -0.1 273,106 - GFF257 0.43 -1.2 273,198 + GFF257 0.50 +0.9 273,198 + GFF257 0.50 -0.1 273,198 + GFF257 0.50 +0.4 273,198 + GFF257 0.50 -0.3 273,198 + GFF257 0.50 +1.1 273,198 + GFF257 0.50 +0.3 273,199 - GFF257 0.50 -0.4 273,199 - GFF257 0.50 +0.2 273,199 - GFF257 0.50 +0.4 273,199 - GFF257 0.50 -0.3 273,199 - GFF257 0.50 -0.5 273,199 - GFF257 0.50 +0.7 273,199 - GFF257 0.50 -0.0 273,199 - GFF257 0.50 -0.1 273,199 - GFF257 0.50 +0.0 273,199 - GFF257 0.50 +0.1 273,199 - GFF257 0.50 -0.1 273,199 - GFF257 0.50 +0.3 273,372 + GFF257 0.63 -0.0 273,372 + GFF257 0.63 -1.2 273,373 - GFF257 0.63 -1.0 273,373 - GFF257 0.63 -0.1
Or see this region's nucleotide sequence