Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2554

Experiment: Ying_sugar7 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 1
141,862	-		GFF2553	0.29	+0.6
141,975	+		GFF2553	0.37	+0.8
142,185	+		GFF2553	0.53	+0.6
142,296	+		GFF2553	0.62	+0.0
142,296	+		GFF2553	0.62	+0.2
142,296	+		GFF2553	0.62	+0.4
142,297	-		GFF2553	0.62	+0.1
142,329	+		GFF2553	0.64	-0.3
142,329	+		GFF2553	0.64	+1.4
142,329	+		GFF2553	0.64	-0.7
142,602	-		GFF2553	0.85	-0.2
142,603	-		GFF2553	0.85	-0.1
142,638	+		GFF2553	0.88	-0.0
142,638	+		GFF2553	0.88	-1.6
142,639	-		GFF2553	0.88	+0.7
142,639	-		GFF2553	0.88	+0.9
142,639	-		GFF2553	0.88	-0.2
142,713	+				-0.0
142,714	-				+0.3
143,005	+		GFF2554	0.16	+0.5
143,167	+		GFF2554	0.30	+1.6
143,167	+		GFF2554	0.30	-0.3
143,167	+		GFF2554	0.30	+0.3
143,168	-		GFF2554	0.30	-0.4
143,168	-		GFF2554	0.30	+0.8
143,168	-		GFF2554	0.30	-1.0
143,239	+		GFF2554	0.36	-1.3
143,239	+		GFF2554	0.36	-0.2
143,239	+		GFF2554	0.36	+1.0
143,240	-		GFF2554	0.36	-1.4
143,240	-		GFF2554	0.36	-0.8
143,240	-		GFF2554	0.36	+0.3
143,287	+		GFF2554	0.40	+0.1
143,287	+		GFF2554	0.40	-0.3
143,405	-		GFF2554	0.51	-0.7
143,405	-		GFF2554	0.51	-0.2
143,405	-		GFF2554	0.51	+0.4
143,405	-		GFF2554	0.51	+0.2
143,405	-		GFF2554	0.51	-0.7
143,405	-		GFF2554	0.51	+0.0
143,449	+		GFF2554	0.54	+0.8
143,656	-		GFF2554	0.72	+0.5
143,686	+		GFF2554	0.75	+0.3
143,686	+		GFF2554	0.75	+0.1
143,686	+		GFF2554	0.75	+0.3
143,687	-		GFF2554	0.75	-0.6
143,752	+		GFF2554	0.80	-0.0
143,794	+		GFF2554	0.84	-0.2
143,794	+		GFF2554	0.84	-1.1
143,795	-		GFF2554	0.84	+0.3
143,795	-		GFF2554	0.84	-0.5
143,795	-		GFF2554	0.84	+0.4
143,795	-		GFF2554	0.84	-0.3
143,857	+		GFF2554	0.89	+0.1
143,857	+		GFF2554	0.89	-0.2
143,858	-		GFF2554	0.89	+0.1
143,886	+				+0.5
143,887	+				+0.1
143,888	-				+0.1
143,888	-				+0.6
143,981	+				-0.6
143,981	+				+1.1
143,982	-				+0.3
144,009	+				+0.4
144,009	+				-0.4
144,009	+				-0.4
144,010	-				+0.3
144,297	+		GFF2555	0.33	+0.1
144,298	-		GFF2555	0.33	+0.5
144,298	-		GFF2555	0.33	+0.5
144,417	+		GFF2555	0.45	+1.1
144,417	+		GFF2555	0.45	+1.1
144,417	+		GFF2555	0.45	+1.4
144,417	+		GFF2555	0.45	-0.1
144,418	-		GFF2555	0.45	+0.5
144,498	+		GFF2555	0.53	-0.1
144,541	-		GFF2555	0.58	+0.2
144,615	+		GFF2555	0.65	-0.5
144,933	+				-0.2
144,933	+				+0.1
144,933	+				+0.7