Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2360

Experiment: Ying_sugar7 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 1
2,313	+				-0.0
2,313	+				-1.5
2,314	-				+1.0
2,314	-				-1.4
2,314	-				-0.8
2,314	-				-0.6
2,480	+		GFF2359	0.27	+0.4
2,480	+		GFF2359	0.27	+0.1
2,512	-		GFF2359	0.32	-0.9
2,512	-		GFF2359	0.32	-0.3
2,603	-		GFF2359	0.46	+0.5
2,603	-		GFF2359	0.46	-0.5
2,824	+		GFF2359	0.80	-0.2
2,824	+		GFF2359	0.80	-0.2
2,824	+		GFF2359	0.80	+0.2
2,825	-		GFF2359	0.80	-0.9
2,825	-		GFF2359	0.80	-0.3
2,825	-		GFF2359	0.80	-0.2
2,948	+				-0.6
2,948	+				-0.1
2,949	-				+0.4
2,982	+				+0.0
3,141	+				+1.3
3,142	-				+0.2
3,168	+				-0.5
3,168	+				-0.2
3,168	+				-0.1
3,168	+				-0.2
3,169	-				-0.0
3,169	-				-1.2
3,169	-				+0.5
3,169	-				+0.8
3,169	-				-0.7
3,169	-				+0.1
3,169	-				-0.2
3,169	-				-0.2
3,169	-				+0.0
3,329	+				+0.9
3,376	-		GFF2360	0.12	+2.1
3,376	-		GFF2360	0.12	-0.1
3,376	-		GFF2360	0.12	-0.2
3,376	-		GFF2360	0.12	+0.4
3,439	-		GFF2360	0.23	+1.4
3,492	-		GFF2360	0.32	+0.5
3,535	-		GFF2360	0.39	+0.4
3,535	-		GFF2360	0.39	-0.0
3,535	-		GFF2360	0.39	-1.0
3,535	-		GFF2360	0.39	+0.3
3,574	-		GFF2360	0.45	-0.2
3,633	+		GFF2360	0.55	+0.1
3,633	+		GFF2360	0.55	-0.1
3,633	+		GFF2360	0.55	-0.6
3,634	-		GFF2360	0.55	+0.4
3,634	-		GFF2360	0.55	+0.1
3,634	-		GFF2360	0.55	+0.2
3,654	+		GFF2360	0.58	+0.7
3,655	-		GFF2360	0.58	+0.2
3,879	+				-0.2
3,879	+				+0.6
3,879	+				-0.4
3,879	+				-0.9
3,880	-				+1.2
3,885	+				+0.2
3,886	-				-0.5
3,886	-				-0.1
3,886	-				-0.7
3,886	-				-0.1
3,906	+				+1.1
3,906	+				-0.0
3,907	-				+0.2
4,534	+				-0.5
4,535	-				-0.0
4,535	-				-0.1
4,540	+				+0.4
4,540	+				-0.4
4,550	+				+0.1
4,550	+				+0.5
4,551	-				-0.1
4,551	-				-0.0
4,551	-				-0.9
4,551	-				+0.1
4,597	+				-0.1
4,597	+				-0.1
4,597	+				+0.1
4,598	-				-0.1
4,598	-				+1.0
4,598	-				-0.1
4,745	-		GFF2362	0.26	+0.8
4,780	+		GFF2362	0.34	-0.2
4,780	+		GFF2362	0.34	-0.2
4,780	+		GFF2362	0.34	-0.5
4,781	-		GFF2362	0.34	+0.3
4,781	-		GFF2362	0.34	+0.4
4,781	-		GFF2362	0.34	-1.6
4,781	-		GFF2362	0.34	+0.2
4,807	+		GFF2362	0.39	+0.1
4,807	+		GFF2362	0.39	-0.2
4,808	-		GFF2362	0.40	+1.4