Experiment: Ying_sugar7 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1826 and GFF1827 are separated by 357 nucleotides GFF1827 and GFF1828 are separated by 8 nucleotides GFF1828 and GFF1829 overlap by 4 nucleotides
GFF1826 - 3,4-dihydroxyphenylacetate 2,3-dioxygenase (EC 1.13.11.15), at 690,772 to 691,650
GFF1826
GFF1827 - 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase (EC 1.2.1.60), at 692,008 to 693,480
GFF1827
GFF1828 - 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-), at 693,489 to 694,262
GFF1828
GFF1829 - 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-), at 694,259 to 694,909
GFF1829
Position (kb) 692
693
694 Strain fitness (log2 ratio) -1
0
1
2 at 691.181 kb on + strand, within GFF1826 at 691.181 kb on + strand, within GFF1826 at 691.182 kb on - strand, within GFF1826 at 691.182 kb on - strand, within GFF1826 at 691.298 kb on + strand, within GFF1826 at 691.298 kb on + strand, within GFF1826 at 691.299 kb on - strand, within GFF1826 at 691.299 kb on - strand, within GFF1826 at 691.322 kb on + strand, within GFF1826 at 691.469 kb on + strand, within GFF1826 at 691.469 kb on + strand, within GFF1826 at 691.469 kb on + strand, within GFF1826 at 691.469 kb on + strand, within GFF1826 at 691.469 kb on + strand, within GFF1826 at 691.470 kb on - strand, within GFF1826 at 691.470 kb on - strand, within GFF1826 at 691.470 kb on - strand, within GFF1826 at 691.505 kb on + strand, within GFF1826 at 691.505 kb on + strand, within GFF1826 at 691.506 kb on - strand, within GFF1826 at 691.506 kb on - strand, within GFF1826 at 691.506 kb on - strand, within GFF1826 at 691.506 kb on - strand, within GFF1826 at 691.506 kb on - strand, within GFF1826 at 691.646 kb on + strand at 691.647 kb on - strand at 691.647 kb on - strand at 691.647 kb on - strand at 691.684 kb on + strand at 691.717 kb on + strand at 691.780 kb on - strand at 691.780 kb on - strand at 692.081 kb on + strand at 692.082 kb on - strand at 692.082 kb on - strand at 692.237 kb on + strand, within GFF1827 at 692.237 kb on + strand, within GFF1827 at 692.237 kb on + strand, within GFF1827 at 692.237 kb on + strand, within GFF1827 at 692.238 kb on - strand, within GFF1827 at 692.238 kb on - strand, within GFF1827 at 692.238 kb on - strand, within GFF1827 at 692.238 kb on - strand, within GFF1827 at 692.238 kb on - strand, within GFF1827 at 692.252 kb on + strand, within GFF1827 at 692.253 kb on - strand, within GFF1827 at 692.387 kb on + strand, within GFF1827 at 692.387 kb on + strand, within GFF1827 at 692.388 kb on - strand, within GFF1827 at 692.388 kb on - strand, within GFF1827 at 692.427 kb on - strand, within GFF1827 at 692.427 kb on - strand, within GFF1827 at 692.489 kb on + strand, within GFF1827 at 692.489 kb on + strand, within GFF1827 at 692.490 kb on - strand, within GFF1827 at 692.490 kb on - strand, within GFF1827 at 692.490 kb on - strand, within GFF1827 at 692.490 kb on - strand, within GFF1827 at 692.613 kb on - strand, within GFF1827 at 692.613 kb on - strand, within GFF1827 at 693.090 kb on - strand, within GFF1827 at 693.113 kb on + strand, within GFF1827 at 693.114 kb on - strand, within GFF1827 at 693.152 kb on + strand, within GFF1827 at 693.152 kb on + strand, within GFF1827 at 693.152 kb on + strand, within GFF1827 at 693.153 kb on - strand, within GFF1827 at 693.153 kb on - strand, within GFF1827 at 693.153 kb on - strand, within GFF1827 at 693.637 kb on + strand, within GFF1828 at 693.637 kb on + strand, within GFF1828 at 693.637 kb on + strand, within GFF1828 at 693.638 kb on - strand, within GFF1828 at 693.866 kb on - strand, within GFF1828 at 693.946 kb on + strand, within GFF1828 at 693.947 kb on - strand, within GFF1828 at 693.947 kb on - strand, within GFF1828 at 693.947 kb on - strand, within GFF1828 at 693.947 kb on - strand, within GFF1828 at 694.075 kb on + strand, within GFF1828 at 694.076 kb on - strand, within GFF1828
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 1 remove 691,181 + GFF1826 0.47 -0.4 691,181 + GFF1826 0.47 +0.5 691,182 - GFF1826 0.47 -0.4 691,182 - GFF1826 0.47 +0.3 691,298 + GFF1826 0.60 -0.6 691,298 + GFF1826 0.60 -0.3 691,299 - GFF1826 0.60 +0.2 691,299 - GFF1826 0.60 +0.3 691,322 + GFF1826 0.63 -1.2 691,469 + GFF1826 0.79 +1.1 691,469 + GFF1826 0.79 +0.0 691,469 + GFF1826 0.79 -0.5 691,469 + GFF1826 0.79 +0.1 691,469 + GFF1826 0.79 +0.4 691,470 - GFF1826 0.79 -0.6 691,470 - GFF1826 0.79 -0.1 691,470 - GFF1826 0.79 -0.8 691,505 + GFF1826 0.83 +1.9 691,505 + GFF1826 0.83 -0.0 691,506 - GFF1826 0.84 +0.4 691,506 - GFF1826 0.84 -0.0 691,506 - GFF1826 0.84 -0.6 691,506 - GFF1826 0.84 +0.8 691,506 - GFF1826 0.84 -0.4 691,646 + -0.1 691,647 - -1.2 691,647 - -0.2 691,647 - +0.3 691,684 + -0.2 691,717 + +0.1 691,780 - -0.5 691,780 - +1.7 692,081 + -1.0 692,082 - +0.1 692,082 - -0.1 692,237 + GFF1827 0.16 +1.1 692,237 + GFF1827 0.16 +0.0 692,237 + GFF1827 0.16 +1.7 692,237 + GFF1827 0.16 +0.0 692,238 - GFF1827 0.16 +0.4 692,238 - GFF1827 0.16 +0.1 692,238 - GFF1827 0.16 -0.5 692,238 - GFF1827 0.16 +0.1 692,238 - GFF1827 0.16 -0.2 692,252 + GFF1827 0.17 -0.1 692,253 - GFF1827 0.17 -0.1 692,387 + GFF1827 0.26 -0.0 692,387 + GFF1827 0.26 +1.0 692,388 - GFF1827 0.26 -0.3 692,388 - GFF1827 0.26 -0.0 692,427 - GFF1827 0.28 +0.0 692,427 - GFF1827 0.28 +0.3 692,489 + GFF1827 0.33 -0.1 692,489 + GFF1827 0.33 +0.2 692,490 - GFF1827 0.33 +0.3 692,490 - GFF1827 0.33 -0.1 692,490 - GFF1827 0.33 +1.4 692,490 - GFF1827 0.33 -0.3 692,613 - GFF1827 0.41 +0.6 692,613 - GFF1827 0.41 +2.1 693,090 - GFF1827 0.73 +1.3 693,113 + GFF1827 0.75 -1.5 693,114 - GFF1827 0.75 +0.3 693,152 + GFF1827 0.78 +0.2 693,152 + GFF1827 0.78 +0.8 693,152 + GFF1827 0.78 -0.3 693,153 - GFF1827 0.78 -0.4 693,153 - GFF1827 0.78 +0.2 693,153 - GFF1827 0.78 -0.6 693,637 + GFF1828 0.19 -0.3 693,637 + GFF1828 0.19 +0.4 693,637 + GFF1828 0.19 -0.2 693,638 - GFF1828 0.19 +0.2 693,866 - GFF1828 0.49 +0.1 693,946 + GFF1828 0.59 -0.2 693,947 - GFF1828 0.59 +0.4 693,947 - GFF1828 0.59 +0.6 693,947 - GFF1828 0.59 -0.4 693,947 - GFF1828 0.59 +0.2 694,075 + GFF1828 0.76 -0.2 694,076 - GFF1828 0.76 +0.2
Or see this region's nucleotide sequence