Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1790

Experiment: Ying_sugar7 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 1
654,660	+		GFF1789	0.58	+0.8
655,388	+				-0.2
655,388	+				+0.7
655,388	+				-0.9
655,388	+				-0.3
655,389	-				-0.3
655,601	+		GFF1790	0.28	+0.2
655,601	+		GFF1790	0.28	+0.8
655,601	+		GFF1790	0.28	-0.5
655,800	+		GFF1790	0.47	+2.3
655,800	+		GFF1790	0.47	-0.4
656,485	+		GFF1791	0.24	-0.7
656,485	+		GFF1791	0.24	-0.5
656,485	+		GFF1791	0.24	+1.6
656,485	+		GFF1791	0.24	+0.3
656,486	-		GFF1791	0.25	-1.2
656,752	+		GFF1791	0.69	+1.1
656,752	+		GFF1791	0.69	-1.1
656,753	-		GFF1791	0.70	+0.1
656,753	-		GFF1791	0.70	+0.7
656,753	-		GFF1791	0.70	-1.0
656,792	-		GFF1791	0.76	+0.2
656,792	-		GFF1791	0.76	-0.8
656,866	+		GFF1791	0.89	+0.9
656,866	+		GFF1791	0.89	+1.6
656,866	+		GFF1791	0.89	-1.0
656,866	+		GFF1791	0.89	-1.5
656,866	+		GFF1791	0.89	-0.0
656,866	+		GFF1791	0.89	+0.2
656,866	+		GFF1791	0.89	+1.1
656,866	+		GFF1791	0.89	-2.1
656,867	-		GFF1791	0.89	-0.9
656,867	-		GFF1791	0.89	-0.1
656,867	-		GFF1791	0.89	-0.5
656,867	-		GFF1791	0.89	+0.4
656,867	-		GFF1791	0.89	+1.2
656,867	-		GFF1791	0.89	-0.2
656,867	-		GFF1791	0.89	-0.1
656,867	-		GFF1791	0.89	+0.8
656,933	+				-0.2
656,933	+				-0.2
656,933	+				-0.1
656,933	+				+0.6
656,933	+				-0.1
656,933	+				+0.5
656,933	+				+0.0
656,933	+				-0.2
656,933	+				-2.3
656,933	+				-0.1
656,933	+				-0.4
656,933	+				-0.2
656,934	-				-0.2
656,934	-				+0.8
656,934	-				+0.4
656,934	-				+0.2
656,934	-				-0.1
656,934	-				+1.0
656,934	-				-0.5
656,934	-				-0.2
656,990	+				+0.3
656,990	+				+0.3
656,990	+				+0.9
656,990	+				+0.0
656,990	+				-0.2
656,990	+				+0.5
656,990	+				+0.6
656,990	+				+0.3
656,990	+				+0.7
656,990	+				+0.3
656,990	+				-0.1
656,990	+				-0.2
656,990	+				+0.4
656,990	+				-0.1
656,990	+				-2.5
656,991	-				+0.4
656,991	-				+0.2
656,991	-				-0.1
656,991	-				+0.3
656,991	-				+0.1
656,991	-				+0.5
656,991	-				+0.2
656,991	-				-0.1
656,991	-				-0.1
656,991	-				+0.3
656,991	-				-0.1
656,991	-				+0.7
656,991	-				+0.2
656,992	+				-0.1
656,992	+				+0.6
656,992	+				+0.5
656,992	+				+0.3
656,992	+				+1.0
656,992	+				+0.3
656,992	+				+0.7
656,992	+				+0.2
656,993	-				+0.3
656,993	-				-0.2
656,993	-				+0.0
656,993	-				-0.0
656,993	-				-0.6
657,182	+				+0.1
657,182	+				-0.1
657,182	+				-0.4
657,182	+				+1.2
657,314	+				+0.0
657,314	+				+0.4
657,315	-				-0.0
657,315	-				+0.4
657,315	-				+1.4
657,315	-				+0.7