Experiment: Ying_sugar7 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1726 and GFF1727 are separated by 110 nucleotides GFF1727 and GFF1728 overlap by 21 nucleotides GFF1728 and GFF1729 are separated by 42 nucleotides GFF1729 and GFF1730 are separated by 0 nucleotides GFF1730 and GFF1731 are separated by 60 nucleotides
GFF1726 - Phenylacetic acid degradation protein PaaD, thioesterase, at 583,210 to 583,671
GFF1726
GFF1727 - FIG000605: protein co-occurring with transport systems (COG1739), at 583,782 to 584,396
GFF1727
GFF1728 - Transcriptional regulator, TetR family, at 584,376 to 584,972
GFF1728
GFF1729 - Glyoxalase/Bleomycin resistance protein/dioxygenase domain, at 585,015 to 585,470
GFF1729
GFF1730 - Mll3930 protein, at 585,471 to 585,836
GFF1730
GFF1731 - Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family, at 585,897 to 586,304
GFF1731
Position (kb) 584
585 Strain fitness (log2 ratio) -1
0
1
2 at 583.451 kb on + strand, within GFF1726 at 583.452 kb on - strand, within GFF1726 at 583.708 kb on + strand at 583.708 kb on + strand at 583.708 kb on + strand at 583.709 kb on - strand at 583.709 kb on - strand at 583.709 kb on - strand at 583.709 kb on - strand at 583.709 kb on - strand at 583.721 kb on - strand at 583.767 kb on + strand at 583.767 kb on + strand at 583.768 kb on - strand at 583.768 kb on - strand at 583.768 kb on - strand at 583.768 kb on - strand at 583.768 kb on - strand at 583.768 kb on - strand at 583.768 kb on - strand at 583.788 kb on + strand at 583.788 kb on + strand at 583.788 kb on + strand at 583.788 kb on + strand at 583.788 kb on + strand at 583.788 kb on + strand at 583.788 kb on + strand at 583.789 kb on - strand at 583.789 kb on - strand at 583.789 kb on - strand at 583.789 kb on - strand at 583.789 kb on - strand at 583.789 kb on - strand at 584.064 kb on + strand, within GFF1727 at 584.064 kb on + strand, within GFF1727 at 584.064 kb on + strand, within GFF1727 at 584.067 kb on + strand, within GFF1727 at 584.067 kb on + strand, within GFF1727 at 584.068 kb on - strand, within GFF1727 at 584.068 kb on - strand, within GFF1727 at 584.068 kb on - strand, within GFF1727 at 584.068 kb on - strand, within GFF1727 at 584.109 kb on + strand, within GFF1727 at 584.109 kb on + strand, within GFF1727 at 584.109 kb on + strand, within GFF1727 at 584.110 kb on - strand, within GFF1727 at 584.110 kb on - strand, within GFF1727 at 584.193 kb on + strand, within GFF1727 at 584.193 kb on + strand, within GFF1727 at 584.194 kb on - strand, within GFF1727 at 584.194 kb on - strand, within GFF1727 at 584.194 kb on - strand, within GFF1727 at 584.423 kb on - strand at 584.423 kb on - strand at 584.668 kb on + strand, within GFF1728 at 584.668 kb on + strand, within GFF1728 at 584.807 kb on - strand, within GFF1728 at 584.807 kb on - strand, within GFF1728 at 584.807 kb on - strand, within GFF1728 at 584.807 kb on - strand, within GFF1728 at 584.807 kb on - strand, within GFF1728 at 584.807 kb on - strand, within GFF1728 at 584.807 kb on - strand, within GFF1728 at 584.807 kb on - strand, within GFF1728 at 585.009 kb on + strand at 585.032 kb on + strand at 585.057 kb on + strand at 585.057 kb on + strand at 585.057 kb on + strand at 585.057 kb on + strand at 585.057 kb on + strand at 585.057 kb on + strand at 585.057 kb on + strand at 585.057 kb on + strand at 585.057 kb on + strand at 585.058 kb on - strand at 585.058 kb on - strand at 585.058 kb on - strand at 585.058 kb on - strand at 585.058 kb on - strand at 585.058 kb on - strand at 585.058 kb on - strand at 585.058 kb on - strand at 585.060 kb on + strand at 585.105 kb on + strand, within GFF1729 at 585.106 kb on - strand, within GFF1729 at 585.106 kb on - strand, within GFF1729 at 585.106 kb on - strand, within GFF1729 at 585.106 kb on - strand, within GFF1729 at 585.150 kb on + strand, within GFF1729 at 585.150 kb on + strand, within GFF1729 at 585.151 kb on - strand, within GFF1729 at 585.151 kb on - strand, within GFF1729 at 585.151 kb on - strand, within GFF1729 at 585.151 kb on - strand, within GFF1729 at 585.151 kb on - strand, within GFF1729 at 585.151 kb on - strand, within GFF1729 at 585.151 kb on - strand, within GFF1729 at 585.151 kb on - strand, within GFF1729 at 585.295 kb on - strand, within GFF1729 at 585.295 kb on - strand, within GFF1729 at 585.565 kb on + strand, within GFF1730 at 585.670 kb on + strand, within GFF1730 at 585.670 kb on + strand, within GFF1730 at 585.670 kb on + strand, within GFF1730 at 585.670 kb on + strand, within GFF1730 at 585.670 kb on + strand, within GFF1730 at 585.670 kb on + strand, within GFF1730 at 585.670 kb on + strand, within GFF1730 at 585.670 kb on + strand, within GFF1730 at 585.671 kb on - strand, within GFF1730 at 585.671 kb on - strand, within GFF1730 at 585.671 kb on - strand, within GFF1730 at 585.671 kb on - strand, within GFF1730 at 585.671 kb on - strand, within GFF1730 at 585.671 kb on - strand, within GFF1730 at 585.671 kb on - strand, within GFF1730 at 585.671 kb on - strand, within GFF1730 at 585.671 kb on - strand, within GFF1730 at 585.671 kb on - strand, within GFF1730 at 585.671 kb on - strand, within GFF1730 at 585.671 kb on - strand, within GFF1730 at 585.784 kb on + strand, within GFF1730 at 585.784 kb on + strand, within GFF1730 at 585.784 kb on + strand, within GFF1730 at 585.785 kb on - strand, within GFF1730 at 585.886 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 1 remove 583,451 + GFF1726 0.52 -1.2 583,452 - GFF1726 0.52 -0.7 583,708 + +0.8 583,708 + +0.5 583,708 + -0.7 583,709 - -0.1 583,709 - -0.1 583,709 - +0.2 583,709 - -0.4 583,709 - -0.2 583,721 - +0.0 583,767 + +0.4 583,767 + -0.4 583,768 - -0.5 583,768 - -0.7 583,768 - -0.0 583,768 - -0.1 583,768 - -0.5 583,768 - -0.3 583,768 - -0.1 583,788 + +0.5 583,788 + -0.8 583,788 + -1.2 583,788 + +1.6 583,788 + +0.4 583,788 + -0.3 583,788 + +0.0 583,789 - -0.1 583,789 - +0.8 583,789 - -0.7 583,789 - -0.0 583,789 - +0.9 583,789 - +0.6 584,064 + GFF1727 0.46 -0.3 584,064 + GFF1727 0.46 -0.3 584,064 + GFF1727 0.46 +0.0 584,067 + GFF1727 0.46 +0.3 584,067 + GFF1727 0.46 -0.7 584,068 - GFF1727 0.47 -0.1 584,068 - GFF1727 0.47 -0.6 584,068 - GFF1727 0.47 -0.0 584,068 - GFF1727 0.47 -0.5 584,109 + GFF1727 0.53 +0.4 584,109 + GFF1727 0.53 -0.1 584,109 + GFF1727 0.53 +0.4 584,110 - GFF1727 0.53 -0.3 584,110 - GFF1727 0.53 +0.7 584,193 + GFF1727 0.67 +0.2 584,193 + GFF1727 0.67 +0.5 584,194 - GFF1727 0.67 -0.7 584,194 - GFF1727 0.67 -0.1 584,194 - GFF1727 0.67 +0.0 584,423 - -0.2 584,423 - +0.3 584,668 + GFF1728 0.49 -0.8 584,668 + GFF1728 0.49 -0.5 584,807 - GFF1728 0.72 +0.0 584,807 - GFF1728 0.72 -0.8 584,807 - GFF1728 0.72 -0.4 584,807 - GFF1728 0.72 +0.4 584,807 - GFF1728 0.72 -0.0 584,807 - GFF1728 0.72 +0.3 584,807 - GFF1728 0.72 +0.7 584,807 - GFF1728 0.72 -0.4 585,009 + +0.0 585,032 + -0.3 585,057 + +0.8 585,057 + +0.0 585,057 + +0.5 585,057 + +0.3 585,057 + +0.5 585,057 + +0.2 585,057 + -1.3 585,057 + +0.8 585,057 + +0.3 585,058 - +0.4 585,058 - +0.4 585,058 - -0.2 585,058 - -1.2 585,058 - +0.1 585,058 - +0.4 585,058 - +0.1 585,058 - -0.7 585,060 + -0.0 585,105 + GFF1729 0.20 -0.1 585,106 - GFF1729 0.20 -0.3 585,106 - GFF1729 0.20 +0.3 585,106 - GFF1729 0.20 -0.0 585,106 - GFF1729 0.20 -0.5 585,150 + GFF1729 0.30 +0.5 585,150 + GFF1729 0.30 +1.2 585,151 - GFF1729 0.30 +0.2 585,151 - GFF1729 0.30 +1.1 585,151 - GFF1729 0.30 -0.2 585,151 - GFF1729 0.30 +0.8 585,151 - GFF1729 0.30 +0.4 585,151 - GFF1729 0.30 +0.1 585,151 - GFF1729 0.30 +1.8 585,151 - GFF1729 0.30 +0.4 585,295 - GFF1729 0.61 -0.3 585,295 - GFF1729 0.61 -0.5 585,565 + GFF1730 0.26 -0.1 585,670 + GFF1730 0.54 +0.3 585,670 + GFF1730 0.54 -0.2 585,670 + GFF1730 0.54 +0.5 585,670 + GFF1730 0.54 +0.6 585,670 + GFF1730 0.54 -0.2 585,670 + GFF1730 0.54 -0.2 585,670 + GFF1730 0.54 +1.0 585,670 + GFF1730 0.54 -0.0 585,671 - GFF1730 0.55 +0.3 585,671 - GFF1730 0.55 -0.6 585,671 - GFF1730 0.55 -0.7 585,671 - GFF1730 0.55 -0.1 585,671 - GFF1730 0.55 -1.5 585,671 - GFF1730 0.55 -0.4 585,671 - GFF1730 0.55 -0.2 585,671 - GFF1730 0.55 +0.7 585,671 - GFF1730 0.55 +0.1 585,671 - GFF1730 0.55 +0.5 585,671 - GFF1730 0.55 +1.0 585,671 - GFF1730 0.55 -0.6 585,784 + GFF1730 0.86 -0.1 585,784 + GFF1730 0.86 -1.0 585,784 + GFF1730 0.86 +0.5 585,785 - GFF1730 0.86 +1.0 585,886 + -0.3
Or see this region's nucleotide sequence