Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1399

Experiment: Ying_sugar7 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 1
259,346	-				-0.1
259,569	+				-0.7
259,614	-				-0.9
259,675	-				+0.6
259,684	-				+0.9
259,695	+				+0.7
259,695	+				-0.2
259,695	+				-0.1
259,781	-				+0.3
259,985	-				+0.3
260,070	+				+0.8
260,071	-				+0.7
260,075	-				+1.1
260,075	-				-0.5
260,111	-				+0.1
260,112	+				+0.2
260,112	+				+0.1
260,112	+				+0.1
260,112	+				-0.3
260,112	+				+0.1
260,112	+				+0.2
260,112	+				-0.4
260,112	+				-0.5
260,112	+				+0.8
260,112	+				+0.5
260,112	+				+0.1
260,113	-				+0.4
260,113	-				+0.1
260,113	-				+0.5
260,113	-				-0.9
260,113	-				+0.0
260,113	-				-1.4
260,114	+				-1.4
260,114	+				+0.1
260,115	-				-0.4
260,115	-				-0.3
260,115	-				+0.3
260,115	-				+0.1
260,115	-				+0.8
260,151	+				-0.6
260,151	+				-0.8
260,152	-				+0.5
260,299	-				-0.6
260,334	+				-0.6
260,338	+				+0.1
260,355	+				-0.5
260,386	-				-0.5
260,434	-		GFF1399	0.17	-0.4
260,508	+		GFF1399	0.30	-0.4
260,509	-		GFF1399	0.30	-0.5
260,509	-		GFF1399	0.30	-1.3
260,509	-		GFF1399	0.30	+1.4
260,509	-		GFF1399	0.30	-0.5
260,549	+		GFF1399	0.37	-0.5
260,549	+		GFF1399	0.37	-0.8
260,549	+		GFF1399	0.37	-0.9
260,550	-		GFF1399	0.37	-0.4
260,550	-		GFF1399	0.37	+0.4
261,321	+				-0.4
261,321	+				-0.0
261,327	+				-0.3
261,327	+				+2.5
261,327	+				-1.2
261,327	+				-0.1
261,327	+				+0.1
261,328	-				+0.2
261,328	-				-0.8
261,331	+				-0.4
261,331	+				+0.3
261,331	+				-0.2
261,332	-				+0.1
261,333	+				+1.0
261,364	-				-2.1
261,364	-				-0.1
261,374	+				+0.9
261,453	+				-0.8
261,453	+				-1.2
261,454	-				+0.7
261,454	-				-0.2
261,484	+				-0.8
261,485	-				+0.1
261,485	-				+0.2
261,578	+				-0.2
261,593	+				-0.2
261,594	-				-0.5
261,594	-				-1.3
261,594	-				-0.1
261,594	-				+0.1
261,607	+				-0.2
261,621	+				+0.9
261,622	-				+0.2
261,640	+				-0.6
261,641	-				-0.2
261,725	+				+0.1
261,726	-				+0.6
261,728	-				+0.4
261,728	-				-0.5
261,857	+				-0.2
261,858	-				+0.5
261,886	+				-0.4
261,887	-				+0.4
261,906	+				+0.3