Experiment: Ying_sugar7 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1395 and GFF1396 are separated by 3 nucleotides GFF1396 and GFF1397 overlap by 4 nucleotides
GFF1395 - HlyD family secretion protein, at 251,597 to 253,018
GFF1395
GFF1396 - cyclolysin secretion ATP-binding protein, at 253,022 to 255,229
GFF1396
GFF1397 - Alkaline phosphatase (EC 3.1.3.1), at 255,226 to 258,711
GFF1397
Position (kb) 253
254
255
256 Strain fitness (log2 ratio) -2
-1
0
1 at 252.273 kb on + strand, within GFF1395 at 252.976 kb on + strand at 253.023 kb on + strand at 253.024 kb on - strand at 253.233 kb on + strand at 253.590 kb on + strand, within GFF1396 at 253.591 kb on - strand, within GFF1396 at 253.591 kb on - strand, within GFF1396 at 253.591 kb on - strand, within GFF1396 at 253.965 kb on + strand, within GFF1396 at 253.965 kb on + strand, within GFF1396 at 253.966 kb on - strand, within GFF1396 at 254.058 kb on + strand, within GFF1396 at 254.059 kb on - strand, within GFF1396 at 254.059 kb on - strand, within GFF1396 at 254.059 kb on - strand, within GFF1396 at 254.059 kb on - strand, within GFF1396 at 254.059 kb on - strand, within GFF1396 at 254.059 kb on - strand, within GFF1396 at 254.214 kb on + strand, within GFF1396 at 254.214 kb on + strand, within GFF1396 at 254.236 kb on - strand, within GFF1396 at 254.236 kb on - strand, within GFF1396 at 254.281 kb on - strand, within GFF1396 at 254.281 kb on - strand, within GFF1396 at 254.281 kb on - strand, within GFF1396 at 254.283 kb on + strand, within GFF1396 at 254.284 kb on - strand, within GFF1396 at 254.506 kb on - strand, within GFF1396 at 254.698 kb on - strand, within GFF1396 at 255.395 kb on + strand at 255.395 kb on + strand at 255.396 kb on - strand at 255.698 kb on + strand, within GFF1397 at 255.698 kb on + strand, within GFF1397 at 255.752 kb on + strand, within GFF1397 at 255.885 kb on - strand, within GFF1397 at 255.908 kb on + strand, within GFF1397 at 255.908 kb on + strand, within GFF1397 at 255.908 kb on + strand, within GFF1397 at 255.942 kb on - strand, within GFF1397 at 256.049 kb on + strand, within GFF1397 at 256.050 kb on - strand, within GFF1397 at 256.091 kb on + strand, within GFF1397 at 256.121 kb on + strand, within GFF1397 at 256.122 kb on - strand, within GFF1397
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 1 remove 252,273 + GFF1395 0.48 -0.9 252,976 + -0.9 253,023 + +0.3 253,024 - +0.2 253,233 + +1.0 253,590 + GFF1396 0.26 -0.4 253,591 - GFF1396 0.26 +0.8 253,591 - GFF1396 0.26 +0.1 253,591 - GFF1396 0.26 -0.0 253,965 + GFF1396 0.43 -0.3 253,965 + GFF1396 0.43 +0.4 253,966 - GFF1396 0.43 +1.0 254,058 + GFF1396 0.47 -0.6 254,059 - GFF1396 0.47 -0.6 254,059 - GFF1396 0.47 +0.4 254,059 - GFF1396 0.47 -0.3 254,059 - GFF1396 0.47 +0.6 254,059 - GFF1396 0.47 +1.0 254,059 - GFF1396 0.47 +0.6 254,214 + GFF1396 0.54 +0.3 254,214 + GFF1396 0.54 -1.9 254,236 - GFF1396 0.55 +1.1 254,236 - GFF1396 0.55 +0.0 254,281 - GFF1396 0.57 -0.5 254,281 - GFF1396 0.57 +0.1 254,281 - GFF1396 0.57 -0.5 254,283 + GFF1396 0.57 +0.7 254,284 - GFF1396 0.57 +0.0 254,506 - GFF1396 0.67 -0.2 254,698 - GFF1396 0.76 -0.2 255,395 + -0.0 255,395 + -0.7 255,396 - -0.4 255,698 + GFF1397 0.14 +0.4 255,698 + GFF1397 0.14 +0.4 255,752 + GFF1397 0.15 -0.2 255,885 - GFF1397 0.19 -0.2 255,908 + GFF1397 0.20 +0.1 255,908 + GFF1397 0.20 +0.2 255,908 + GFF1397 0.20 -0.2 255,942 - GFF1397 0.21 +0.0 256,049 + GFF1397 0.24 +0.1 256,050 - GFF1397 0.24 +0.1 256,091 + GFF1397 0.25 -0.0 256,121 + GFF1397 0.26 +0.5 256,122 - GFF1397 0.26 -0.4
Or see this region's nucleotide sequence