Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1279

Experiment: Ying_sugar7 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1278 and GFF2347 are separated by 50 nucleotidesGFF2347 and GFF1279 are separated by 200 nucleotidesGFF1279 and GFF1280 are separated by 32 nucleotides GFF1278 - Octaprenyl diphosphate synthase (EC 2.5.1.90), at 135,142 to 136,092 GFF1278 GFF2347 - tRNA-Pro-CGG, at 136,143 to 136,216 GFF2347 GFF1279 - Type IV fimbrial assembly, ATPase PilB, at 136,417 to 138,111 GFF1279 GFF1280 - Type IV fimbrial assembly protein PilC, at 138,144 to 139,361 GFF1280 Position (kb) 136 137 138 139Strain fitness (log2 ratio) -2 -1 0 1 2at 136.150 kb on + strandat 136.150 kb on + strandat 136.151 kb on - strand, within GFF2347at 136.151 kb on - strand, within GFF2347at 136.151 kb on - strand, within GFF2347at 136.155 kb on + strand, within GFF2347at 136.156 kb on - strand, within GFF2347at 136.163 kb on + strand, within GFF2347at 136.163 kb on + strand, within GFF2347at 136.163 kb on + strand, within GFF2347at 136.164 kb on - strand, within GFF2347at 136.171 kb on + strand, within GFF2347at 136.184 kb on + strand, within GFF2347at 136.184 kb on + strand, within GFF2347at 136.184 kb on + strand, within GFF2347at 136.184 kb on + strand, within GFF2347at 136.185 kb on - strand, within GFF2347at 136.288 kb on + strandat 136.288 kb on + strandat 136.289 kb on - strandat 136.289 kb on - strandat 136.289 kb on - strandat 136.336 kb on + strandat 136.336 kb on + strandat 136.336 kb on + strandat 136.337 kb on - strandat 136.337 kb on - strandat 136.337 kb on - strandat 136.360 kb on - strandat 136.364 kb on + strandat 136.364 kb on + strandat 136.364 kb on + strandat 136.369 kb on + strandat 136.369 kb on + strandat 136.369 kb on + strandat 136.369 kb on + strandat 136.369 kb on + strandat 136.369 kb on + strandat 136.369 kb on + strandat 136.369 kb on + strandat 136.369 kb on + strandat 136.369 kb on + strandat 136.369 kb on + strandat 136.369 kb on + strandat 136.370 kb on - strandat 136.370 kb on - strandat 136.370 kb on - strandat 136.370 kb on - strandat 136.370 kb on - strandat 136.370 kb on - strandat 136.370 kb on - strandat 136.370 kb on - strandat 136.370 kb on - strandat 136.376 kb on + strandat 136.377 kb on + strandat 136.378 kb on - strandat 136.489 kb on + strandat 136.673 kb on - strand, within GFF1279at 136.801 kb on + strand, within GFF1279at 136.801 kb on + strand, within GFF1279at 136.802 kb on - strand, within GFF1279at 136.802 kb on - strand, within GFF1279at 136.802 kb on - strand, within GFF1279at 137.029 kb on + strand, within GFF1279at 137.029 kb on + strand, within GFF1279at 137.030 kb on - strand, within GFF1279at 137.041 kb on + strand, within GFF1279at 137.041 kb on + strand, within GFF1279at 137.041 kb on + strand, within GFF1279at 137.269 kb on - strand, within GFF1279at 137.298 kb on + strand, within GFF1279at 137.315 kb on - strand, within GFF1279at 137.315 kb on - strand, within GFF1279at 137.416 kb on + strand, within GFF1279at 137.416 kb on + strand, within GFF1279at 137.416 kb on + strand, within GFF1279at 137.416 kb on + strand, within GFF1279at 137.416 kb on + strand, within GFF1279at 137.416 kb on + strand, within GFF1279at 137.417 kb on - strand, within GFF1279at 137.417 kb on - strand, within GFF1279at 137.417 kb on - strand, within GFF1279at 137.417 kb on - strand, within GFF1279at 137.417 kb on - strand, within GFF1279at 137.417 kb on - strand, within GFF1279at 137.518 kb on + strand, within GFF1279at 137.875 kb on + strand, within GFF1279at 137.875 kb on + strand, within GFF1279at 137.875 kb on + strand, within GFF1279at 137.875 kb on + strand, within GFF1279at 137.875 kb on + strand, within GFF1279at 137.875 kb on + strand, within GFF1279at 137.875 kb on + strand, within GFF1279at 137.875 kb on + strand, within GFF1279at 137.875 kb on + strand, within GFF1279at 137.876 kb on - strand, within GFF1279at 137.876 kb on - strand, within GFF1279at 137.876 kb on - strand, within GFF1279at 137.876 kb on - strand, within GFF1279at 137.911 kb on + strand, within GFF1279at 137.911 kb on + strand, within GFF1279at 137.912 kb on - strand, within GFF1279at 137.932 kb on + strand, within GFF1279at 137.932 kb on + strand, within GFF1279at 137.932 kb on + strand, within GFF1279at 137.932 kb on + strand, within GFF1279at 137.933 kb on - strand, within GFF1279at 137.933 kb on - strand, within GFF1279at 137.933 kb on - strand, within GFF1279at 137.933 kb on - strand, within GFF1279at 138.120 kb on + strandat 138.120 kb on + strandat 138.120 kb on + strandat 138.121 kb on - strandat 138.121 kb on - strandat 138.157 kb on + strandat 138.525 kb on + strand, within GFF1280at 138.525 kb on + strand, within GFF1280at 138.526 kb on - strand, within GFF1280at 138.540 kb on + strand, within GFF1280at 138.540 kb on + strand, within GFF1280at 138.540 kb on + strand, within GFF1280at 138.540 kb on + strand, within GFF1280at 138.540 kb on + strand, within GFF1280at 138.575 kb on + strand, within GFF1280at 138.609 kb on + strand, within GFF1280at 138.609 kb on + strand, within GFF1280at 138.609 kb on + strand, within GFF1280at 138.609 kb on + strand, within GFF1280at 138.609 kb on + strand, within GFF1280at 138.609 kb on + strand, within GFF1280at 138.609 kb on + strand, within GFF1280at 138.609 kb on + strand, within GFF1280at 138.609 kb on + strand, within GFF1280at 138.609 kb on + strand, within GFF1280at 138.609 kb on + strand, within GFF1280at 138.609 kb on + strand, within GFF1280at 138.609 kb on + strand, within GFF1280at 138.609 kb on + strand, within GFF1280at 138.609 kb on + strand, within GFF1280at 138.610 kb on - strand, within GFF1280at 138.610 kb on - strand, within GFF1280at 138.610 kb on - strand, within GFF1280at 138.610 kb on - strand, within GFF1280at 138.610 kb on - strand, within GFF1280at 138.610 kb on - strand, within GFF1280at 138.610 kb on - strand, within GFF1280at 138.644 kb on - strand, within GFF1280at 138.660 kb on + strand, within GFF1280at 138.660 kb on + strand, within GFF1280at 138.660 kb on + strand, within GFF1280at 138.661 kb on - strand, within GFF1280at 138.813 kb on + strand, within GFF1280at 138.813 kb on + strand, within GFF1280at 138.852 kb on + strand, within GFF1280at 138.852 kb on + strand, within GFF1280at 138.852 kb on + strand, within GFF1280at 138.853 kb on - strand, within GFF1280at 138.853 kb on - strand, within GFF1280at 138.853 kb on - strand, within GFF1280at 138.853 kb on - strand, within GFF1280at 138.853 kb on - strand, within GFF1280at 138.937 kb on + strand, within GFF1280at 138.937 kb on + strand, within GFF1280at 138.938 kb on - strand, within GFF1280at 138.938 kb on - strand, within GFF1280at 139.056 kb on + strand, within GFF1280at 139.056 kb on + strand, within GFF1280at 139.056 kb on + strand, within GFF1280at 139.057 kb on - strand, within GFF1280

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 1
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136,150 + +0.2
136,150 + +0.4
136,151 - GFF2347 0.11 -0.1
136,151 - GFF2347 0.11 +0.5
136,151 - GFF2347 0.11 +0.8
136,155 + GFF2347 0.16 +0.2
136,156 - GFF2347 0.18 +0.1
136,163 + GFF2347 0.27 -0.7
136,163 + GFF2347 0.27 +0.4
136,163 + GFF2347 0.27 +1.7
136,164 - GFF2347 0.28 +1.2
136,171 + GFF2347 0.38 +0.8
136,184 + GFF2347 0.55 -0.7
136,184 + GFF2347 0.55 +0.1
136,184 + GFF2347 0.55 -0.2
136,184 + GFF2347 0.55 +0.1
136,185 - GFF2347 0.57 -0.1
136,288 + +0.4
136,288 + -0.1
136,289 - +0.7
136,289 - +0.0
136,289 - +0.1
136,336 + -0.6
136,336 + -0.0
136,336 + +0.3
136,337 - -0.4
136,337 - +0.0
136,337 - +0.1
136,360 - +0.2
136,364 + +0.6
136,364 + +0.2
136,364 + -0.4
136,369 + +0.3
136,369 + +0.7
136,369 + +0.3
136,369 + +0.7
136,369 + +1.0
136,369 + +0.5
136,369 + +0.6
136,369 + +0.4
136,369 + +0.7
136,369 + -1.1
136,369 + +0.4
136,369 + +0.2
136,370 - +1.2
136,370 - +0.5
136,370 - +0.8
136,370 - +0.4
136,370 - -0.0
136,370 - +0.0
136,370 - +0.1
136,370 - +0.3
136,370 - -0.3
136,376 + +0.2
136,377 + -0.1
136,378 - +1.2
136,489 + +0.2
136,673 - GFF1279 0.15 +0.1
136,801 + GFF1279 0.23 +0.5
136,801 + GFF1279 0.23 +0.9
136,802 - GFF1279 0.23 +0.6
136,802 - GFF1279 0.23 +1.5
136,802 - GFF1279 0.23 -0.2
137,029 + GFF1279 0.36 +0.6
137,029 + GFF1279 0.36 +0.4
137,030 - GFF1279 0.36 +0.0
137,041 + GFF1279 0.37 +0.3
137,041 + GFF1279 0.37 +0.9
137,041 + GFF1279 0.37 +0.2
137,269 - GFF1279 0.50 -1.4
137,298 + GFF1279 0.52 +0.1
137,315 - GFF1279 0.53 +0.2
137,315 - GFF1279 0.53 +0.4
137,416 + GFF1279 0.59 +0.5
137,416 + GFF1279 0.59 +0.7
137,416 + GFF1279 0.59 -0.1
137,416 + GFF1279 0.59 -1.1
137,416 + GFF1279 0.59 +0.2
137,416 + GFF1279 0.59 +0.6
137,417 - GFF1279 0.59 -0.3
137,417 - GFF1279 0.59 -0.2
137,417 - GFF1279 0.59 +0.3
137,417 - GFF1279 0.59 +0.8
137,417 - GFF1279 0.59 +0.1
137,417 - GFF1279 0.59 -1.2
137,518 + GFF1279 0.65 +0.4
137,875 + GFF1279 0.86 +0.2
137,875 + GFF1279 0.86 +0.5
137,875 + GFF1279 0.86 +0.5
137,875 + GFF1279 0.86 +2.4
137,875 + GFF1279 0.86 -0.2
137,875 + GFF1279 0.86 -0.0
137,875 + GFF1279 0.86 -0.0
137,875 + GFF1279 0.86 +0.2
137,875 + GFF1279 0.86 +0.3
137,876 - GFF1279 0.86 -0.3
137,876 - GFF1279 0.86 +2.5
137,876 - GFF1279 0.86 -0.2
137,876 - GFF1279 0.86 +0.2
137,911 + GFF1279 0.88 +0.1
137,911 + GFF1279 0.88 -0.6
137,912 - GFF1279 0.88 +1.0
137,932 + GFF1279 0.89 -0.2
137,932 + GFF1279 0.89 -0.1
137,932 + GFF1279 0.89 -0.0
137,932 + GFF1279 0.89 -0.4
137,933 - GFF1279 0.89 +0.2
137,933 - GFF1279 0.89 +0.5
137,933 - GFF1279 0.89 +1.7
137,933 - GFF1279 0.89 +0.8
138,120 + +0.2
138,120 + +0.9
138,120 + -1.6
138,121 - +0.4
138,121 - -1.2
138,157 + +1.0
138,525 + GFF1280 0.31 +1.1
138,525 + GFF1280 0.31 -0.4
138,526 - GFF1280 0.31 +0.4
138,540 + GFF1280 0.33 -0.2
138,540 + GFF1280 0.33 +0.6
138,540 + GFF1280 0.33 +0.1
138,540 + GFF1280 0.33 +0.1
138,540 + GFF1280 0.33 +0.8
138,575 + GFF1280 0.35 -0.4
138,609 + GFF1280 0.38 +1.4
138,609 + GFF1280 0.38 +0.3
138,609 + GFF1280 0.38 +0.2
138,609 + GFF1280 0.38 +0.6
138,609 + GFF1280 0.38 +0.5
138,609 + GFF1280 0.38 -1.1
138,609 + GFF1280 0.38 -0.2
138,609 + GFF1280 0.38 +1.4
138,609 + GFF1280 0.38 +0.7
138,609 + GFF1280 0.38 -0.8
138,609 + GFF1280 0.38 +1.5
138,609 + GFF1280 0.38 +0.1
138,609 + GFF1280 0.38 +0.5
138,609 + GFF1280 0.38 +1.1
138,609 + GFF1280 0.38 -0.0
138,610 - GFF1280 0.38 -1.1
138,610 - GFF1280 0.38 -0.0
138,610 - GFF1280 0.38 -0.2
138,610 - GFF1280 0.38 -0.5
138,610 - GFF1280 0.38 +0.6
138,610 - GFF1280 0.38 +0.7
138,610 - GFF1280 0.38 -0.2
138,644 - GFF1280 0.41 +0.8
138,660 + GFF1280 0.42 +0.9
138,660 + GFF1280 0.42 +0.1
138,660 + GFF1280 0.42 -0.0
138,661 - GFF1280 0.42 +0.3
138,813 + GFF1280 0.55 +0.5
138,813 + GFF1280 0.55 -2.1
138,852 + GFF1280 0.58 +0.7
138,852 + GFF1280 0.58 -0.8
138,852 + GFF1280 0.58 +0.5
138,853 - GFF1280 0.58 -0.3
138,853 - GFF1280 0.58 +0.2
138,853 - GFF1280 0.58 +0.4
138,853 - GFF1280 0.58 +0.6
138,853 - GFF1280 0.58 +0.1
138,937 + GFF1280 0.65 +0.6
138,937 + GFF1280 0.65 -0.5
138,938 - GFF1280 0.65 -0.3
138,938 - GFF1280 0.65 -1.5
139,056 + GFF1280 0.75 -0.1
139,056 + GFF1280 0.75 +1.0
139,056 + GFF1280 0.75 -0.6
139,057 - GFF1280 0.75 -0.0

Or see this region's nucleotide sequence