Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1243

Experiment: Ying_sugar7 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1242 and GFF1243 are separated by 10 nucleotidesGFF1243 and GFF1244 are separated by 41 nucleotidesGFF1244 and GFF1245 overlap by 4 nucleotides GFF1242 - mRNA 3-end processing factor, at 101,789 to 102,808 GFF1242 GFF1243 - Cardiolipin synthetase (EC 2.7.8.-), at 102,819 to 104,084 GFF1243 GFF1244 - Endonuclease/exonuclease/phosphatase, at 104,126 to 104,854 GFF1244 GFF1245 - Dihydroneopterin triphosphate pyrophosphohydolase type 2, at 104,851 to 105,306 GFF1245 Position (kb) 102 103 104 105Strain fitness (log2 ratio) -1 0 1 2 3at 101.862 kb on + strandat 101.863 kb on - strandat 102.177 kb on + strand, within GFF1242at 102.178 kb on - strand, within GFF1242at 102.273 kb on + strand, within GFF1242at 102.273 kb on + strand, within GFF1242at 102.274 kb on - strand, within GFF1242at 102.366 kb on + strand, within GFF1242at 102.471 kb on + strand, within GFF1242at 102.666 kb on + strand, within GFF1242at 102.667 kb on - strand, within GFF1242at 102.667 kb on - strand, within GFF1242at 102.747 kb on + strandat 102.747 kb on + strandat 102.747 kb on + strandat 102.747 kb on + strandat 102.747 kb on + strandat 102.748 kb on - strandat 102.748 kb on - strandat 102.748 kb on - strandat 102.748 kb on - strandat 102.748 kb on - strandat 102.768 kb on + strandat 102.768 kb on + strandat 102.820 kb on + strandat 102.820 kb on + strandat 102.820 kb on + strandat 102.820 kb on + strandat 102.821 kb on - strandat 102.823 kb on + strandat 102.961 kb on + strand, within GFF1243at 102.962 kb on - strand, within GFF1243at 102.962 kb on - strand, within GFF1243at 103.114 kb on + strand, within GFF1243at 103.114 kb on + strand, within GFF1243at 103.114 kb on + strand, within GFF1243at 103.114 kb on + strand, within GFF1243at 103.114 kb on + strand, within GFF1243at 103.115 kb on - strand, within GFF1243at 103.115 kb on - strand, within GFF1243at 103.115 kb on - strand, within GFF1243at 103.153 kb on + strand, within GFF1243at 103.153 kb on + strand, within GFF1243at 103.153 kb on + strand, within GFF1243at 103.279 kb on + strand, within GFF1243at 103.279 kb on + strand, within GFF1243at 103.279 kb on + strand, within GFF1243at 103.280 kb on - strand, within GFF1243at 103.331 kb on - strand, within GFF1243at 103.429 kb on + strand, within GFF1243at 103.430 kb on - strand, within GFF1243at 103.813 kb on + strand, within GFF1243at 103.813 kb on + strand, within GFF1243at 103.814 kb on - strand, within GFF1243at 103.814 kb on - strand, within GFF1243at 103.814 kb on - strand, within GFF1243at 103.814 kb on - strand, within GFF1243at 103.814 kb on - strand, within GFF1243at 103.978 kb on + strandat 103.978 kb on + strandat 103.978 kb on + strandat 103.978 kb on + strandat 103.978 kb on + strandat 103.979 kb on - strandat 103.979 kb on - strandat 103.979 kb on - strandat 104.265 kb on + strand, within GFF1244at 104.265 kb on + strand, within GFF1244at 104.265 kb on + strand, within GFF1244at 104.265 kb on + strand, within GFF1244at 104.265 kb on + strand, within GFF1244at 104.397 kb on + strand, within GFF1244at 104.397 kb on + strand, within GFF1244at 104.398 kb on - strand, within GFF1244at 104.398 kb on - strand, within GFF1244at 104.398 kb on - strand, within GFF1244at 104.398 kb on - strand, within GFF1244at 104.472 kb on + strand, within GFF1244at 104.623 kb on - strand, within GFF1244at 104.634 kb on + strand, within GFF1244at 104.635 kb on - strand, within GFF1244at 104.652 kb on + strand, within GFF1244at 104.652 kb on + strand, within GFF1244at 104.653 kb on - strand, within GFF1244at 104.829 kb on + strandat 104.829 kb on + strandat 104.830 kb on - strandat 104.830 kb on - strandat 104.830 kb on - strandat 104.830 kb on - strandat 104.830 kb on - strandat 104.830 kb on - strandat 104.830 kb on - strandat 105.051 kb on - strand, within GFF1245at 105.051 kb on - strand, within GFF1245at 105.071 kb on + strand, within GFF1245at 105.071 kb on + strand, within GFF1245at 105.071 kb on + strand, within GFF1245at 105.071 kb on + strand, within GFF1245at 105.072 kb on - strand, within GFF1245at 105.072 kb on - strand, within GFF1245at 105.080 kb on + strand, within GFF1245at 105.080 kb on + strand, within GFF1245at 105.080 kb on + strand, within GFF1245at 105.081 kb on - strand, within GFF1245

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 1
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101,862 + +0.9
101,863 - -0.1
102,177 + GFF1242 0.38 -0.9
102,178 - GFF1242 0.38 +0.7
102,273 + GFF1242 0.47 -0.2
102,273 + GFF1242 0.47 +0.5
102,274 - GFF1242 0.48 -0.1
102,366 + GFF1242 0.57 -0.1
102,471 + GFF1242 0.67 +0.4
102,666 + GFF1242 0.86 +0.3
102,667 - GFF1242 0.86 +1.0
102,667 - GFF1242 0.86 -0.4
102,747 + +0.7
102,747 + -1.1
102,747 + +0.7
102,747 + +0.2
102,747 + -0.2
102,748 - -0.1
102,748 - -0.3
102,748 - -0.6
102,748 - +0.1
102,748 - -0.1
102,768 + -0.5
102,768 + -0.3
102,820 + +0.9
102,820 + -1.2
102,820 + +1.1
102,820 + +1.1
102,821 - -1.0
102,823 + -0.0
102,961 + GFF1243 0.11 +0.1
102,962 - GFF1243 0.11 +0.3
102,962 - GFF1243 0.11 +0.4
103,114 + GFF1243 0.23 -0.2
103,114 + GFF1243 0.23 -0.0
103,114 + GFF1243 0.23 +1.0
103,114 + GFF1243 0.23 +0.1
103,114 + GFF1243 0.23 -0.0
103,115 - GFF1243 0.23 +0.6
103,115 - GFF1243 0.23 -0.2
103,115 - GFF1243 0.23 +0.7
103,153 + GFF1243 0.26 -0.2
103,153 + GFF1243 0.26 +1.1
103,153 + GFF1243 0.26 +0.4
103,279 + GFF1243 0.36 +0.2
103,279 + GFF1243 0.36 +0.1
103,279 + GFF1243 0.36 +0.9
103,280 - GFF1243 0.36 +0.4
103,331 - GFF1243 0.40 +0.2
103,429 + GFF1243 0.48 +0.2
103,430 - GFF1243 0.48 -1.4
103,813 + GFF1243 0.79 +0.5
103,813 + GFF1243 0.79 +0.5
103,814 - GFF1243 0.79 -0.5
103,814 - GFF1243 0.79 +0.4
103,814 - GFF1243 0.79 +0.9
103,814 - GFF1243 0.79 +0.6
103,814 - GFF1243 0.79 +0.1
103,978 + +1.0
103,978 + +0.4
103,978 + +0.2
103,978 + +0.6
103,978 + +0.1
103,979 - -0.2
103,979 - -0.1
103,979 - +1.8
104,265 + GFF1244 0.19 +0.2
104,265 + GFF1244 0.19 -0.4
104,265 + GFF1244 0.19 -0.8
104,265 + GFF1244 0.19 -0.6
104,265 + GFF1244 0.19 +0.2
104,397 + GFF1244 0.37 +0.4
104,397 + GFF1244 0.37 -0.1
104,398 - GFF1244 0.37 +0.9
104,398 - GFF1244 0.37 -0.1
104,398 - GFF1244 0.37 +0.2
104,398 - GFF1244 0.37 -0.2
104,472 + GFF1244 0.47 +0.7
104,623 - GFF1244 0.68 +0.3
104,634 + GFF1244 0.70 +0.1
104,635 - GFF1244 0.70 -1.2
104,652 + GFF1244 0.72 -0.6
104,652 + GFF1244 0.72 -0.2
104,653 - GFF1244 0.72 -0.6
104,829 + -0.1
104,829 + -0.7
104,830 - +0.8
104,830 - +1.2
104,830 - -1.3
104,830 - +0.0
104,830 - +3.0
104,830 - +0.7
104,830 - -0.7
105,051 - GFF1245 0.44 -0.5
105,051 - GFF1245 0.44 +0.5
105,071 + GFF1245 0.48 +0.3
105,071 + GFF1245 0.48 +0.2
105,071 + GFF1245 0.48 +1.1
105,071 + GFF1245 0.48 -0.9
105,072 - GFF1245 0.48 -0.5
105,072 - GFF1245 0.48 -0.3
105,080 + GFF1245 0.50 +0.2
105,080 + GFF1245 0.50 +0.2
105,080 + GFF1245 0.50 -1.1
105,081 - GFF1245 0.50 -0.2

Or see this region's nucleotide sequence