Experiment: Ying_sugar7 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1212 and GFF1213 are separated by 12 nucleotides GFF1213 and GFF1214 overlap by 4 nucleotides GFF1214 and GFF1215 are separated by 10 nucleotides
GFF1212 - FIG01197990: hypothetical protein, at 76,703 to 76,915
GFF1212
GFF1213 - Segregation and condensation protein A, at 76,928 to 77,776
GFF1213
GFF1214 - L-aspartate oxidase (EC 1.4.3.16), at 77,773 to 79,371
GFF1214
GFF1215 - Para-aminobenzoate synthase, aminase component (EC 2.6.1.85) / Aminodeoxychorismate lyase (EC 4.1.3.38), at 79,382 to 81,160
GFF1215
Position (kb) 77
78
79
80 Strain fitness (log2 ratio) -2
-1
0
1
2 at 76.889 kb on + strand, within GFF1212 at 77.762 kb on + strand at 77.762 kb on + strand at 77.763 kb on - strand at 77.763 kb on - strand at 78.301 kb on + strand, within GFF1214 at 78.301 kb on + strand, within GFF1214 at 78.301 kb on + strand, within GFF1214 at 78.301 kb on + strand, within GFF1214 at 78.349 kb on + strand, within GFF1214 at 78.349 kb on + strand, within GFF1214 at 78.349 kb on + strand, within GFF1214 at 78.349 kb on + strand, within GFF1214 at 78.349 kb on + strand, within GFF1214 at 78.349 kb on + strand, within GFF1214 at 78.349 kb on + strand, within GFF1214 at 78.350 kb on - strand, within GFF1214 at 78.350 kb on - strand, within GFF1214 at 78.350 kb on - strand, within GFF1214 at 78.350 kb on - strand, within GFF1214 at 78.350 kb on - strand, within GFF1214 at 78.350 kb on - strand, within GFF1214 at 78.351 kb on + strand, within GFF1214 at 78.352 kb on - strand, within GFF1214 at 78.352 kb on - strand, within GFF1214 at 78.385 kb on + strand, within GFF1214 at 78.385 kb on + strand, within GFF1214 at 78.386 kb on - strand, within GFF1214 at 78.386 kb on - strand, within GFF1214 at 78.386 kb on - strand, within GFF1214 at 78.391 kb on + strand, within GFF1214 at 78.391 kb on + strand, within GFF1214 at 78.391 kb on + strand, within GFF1214 at 78.391 kb on + strand, within GFF1214 at 78.391 kb on + strand, within GFF1214 at 78.391 kb on + strand, within GFF1214 at 78.392 kb on - strand, within GFF1214 at 78.392 kb on - strand, within GFF1214 at 78.499 kb on + strand, within GFF1214 at 78.499 kb on + strand, within GFF1214 at 78.499 kb on + strand, within GFF1214 at 78.499 kb on + strand, within GFF1214 at 78.500 kb on - strand, within GFF1214 at 78.500 kb on - strand, within GFF1214 at 78.817 kb on + strand, within GFF1214 at 78.818 kb on - strand, within GFF1214 at 78.818 kb on - strand, within GFF1214 at 78.874 kb on + strand, within GFF1214 at 78.874 kb on + strand, within GFF1214 at 78.874 kb on + strand, within GFF1214 at 78.874 kb on + strand, within GFF1214 at 78.875 kb on - strand, within GFF1214 at 79.108 kb on + strand, within GFF1214 at 79.108 kb on + strand, within GFF1214 at 79.108 kb on + strand, within GFF1214 at 79.108 kb on + strand, within GFF1214 at 79.109 kb on - strand, within GFF1214 at 79.109 kb on - strand, within GFF1214 at 79.192 kb on + strand, within GFF1214 at 79.192 kb on + strand, within GFF1214 at 79.192 kb on + strand, within GFF1214 at 79.192 kb on + strand, within GFF1214 at 79.193 kb on - strand, within GFF1214 at 79.677 kb on + strand, within GFF1215 at 79.678 kb on - strand, within GFF1215 at 79.678 kb on - strand, within GFF1215 at 80.193 kb on + strand, within GFF1215 at 80.193 kb on + strand, within GFF1215 at 80.193 kb on + strand, within GFF1215 at 80.194 kb on - strand, within GFF1215 at 80.194 kb on - strand, within GFF1215
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 1 remove 76,889 + GFF1212 0.87 -0.9 77,762 + -0.3 77,762 + -0.1 77,763 - +0.4 77,763 - +0.1 78,301 + GFF1214 0.33 +0.7 78,301 + GFF1214 0.33 -1.9 78,301 + GFF1214 0.33 +0.4 78,301 + GFF1214 0.33 -0.2 78,349 + GFF1214 0.36 +0.5 78,349 + GFF1214 0.36 -1.3 78,349 + GFF1214 0.36 -1.7 78,349 + GFF1214 0.36 -0.7 78,349 + GFF1214 0.36 +0.1 78,349 + GFF1214 0.36 -0.2 78,349 + GFF1214 0.36 -0.4 78,350 - GFF1214 0.36 -0.1 78,350 - GFF1214 0.36 -0.3 78,350 - GFF1214 0.36 -0.2 78,350 - GFF1214 0.36 -0.4 78,350 - GFF1214 0.36 -0.3 78,350 - GFF1214 0.36 +0.5 78,351 + GFF1214 0.36 +0.5 78,352 - GFF1214 0.36 -0.1 78,352 - GFF1214 0.36 -0.4 78,385 + GFF1214 0.38 -0.1 78,385 + GFF1214 0.38 -0.1 78,386 - GFF1214 0.38 +0.0 78,386 - GFF1214 0.38 -0.1 78,386 - GFF1214 0.38 -0.5 78,391 + GFF1214 0.39 +0.2 78,391 + GFF1214 0.39 -0.1 78,391 + GFF1214 0.39 -0.0 78,391 + GFF1214 0.39 -0.2 78,391 + GFF1214 0.39 +1.0 78,391 + GFF1214 0.39 +2.1 78,392 - GFF1214 0.39 -0.2 78,392 - GFF1214 0.39 -0.4 78,499 + GFF1214 0.45 -0.6 78,499 + GFF1214 0.45 +0.1 78,499 + GFF1214 0.45 -0.4 78,499 + GFF1214 0.45 +0.1 78,500 - GFF1214 0.45 -0.6 78,500 - GFF1214 0.45 -0.3 78,817 + GFF1214 0.65 -0.8 78,818 - GFF1214 0.65 +0.1 78,818 - GFF1214 0.65 -0.9 78,874 + GFF1214 0.69 -0.5 78,874 + GFF1214 0.69 -0.4 78,874 + GFF1214 0.69 -0.5 78,874 + GFF1214 0.69 -0.5 78,875 - GFF1214 0.69 -0.3 79,108 + GFF1214 0.83 -0.3 79,108 + GFF1214 0.83 -0.2 79,108 + GFF1214 0.83 +0.0 79,108 + GFF1214 0.83 -0.1 79,109 - GFF1214 0.84 -0.7 79,109 - GFF1214 0.84 +0.2 79,192 + GFF1214 0.89 -0.4 79,192 + GFF1214 0.89 -0.3 79,192 + GFF1214 0.89 +0.8 79,192 + GFF1214 0.89 -0.8 79,193 - GFF1214 0.89 +0.4 79,677 + GFF1215 0.17 +0.7 79,678 - GFF1215 0.17 -0.1 79,678 - GFF1215 0.17 +0.4 80,193 + GFF1215 0.46 +1.7 80,193 + GFF1215 0.46 -1.0 80,193 + GFF1215 0.46 -0.1 80,194 - GFF1215 0.46 +0.4 80,194 - GFF1215 0.46 -0.5
Or see this region's nucleotide sequence