Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1092

Experiment: Ying_sugar7 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 1
6,903	+		GFF1090	0.67	-0.2
6,903	+		GFF1090	0.67	+1.0
6,903	+		GFF1090	0.67	+0.2
6,904	-		GFF1090	0.68	-0.9
6,904	-		GFF1090	0.68	-0.2
6,928	+		GFF1090	0.70	-0.3
6,929	-		GFF1090	0.70	+0.8
7,173	-				-0.9
7,335	+				-0.4
7,336	-				+0.1
7,350	+				+0.2
7,350	+				+0.1
7,350	+				+0.3
7,350	+				-0.3
7,350	+				+0.2
7,350	+				-0.8
7,350	+				+0.2
7,350	+				+0.4
7,350	+				-0.0
7,351	-				+0.8
7,351	-				-0.1
7,351	-				+0.0
7,351	-				-0.4
7,351	-				+0.5
7,351	-				-0.4
7,351	-				+0.4
7,351	-				+0.9
7,351	-				-0.2
7,351	-				+0.9
7,351	-				+0.1
7,363	+				+0.5
7,364	-				-0.5
7,367	-				+1.4
7,386	+				-0.1
7,386	+				+0.6
7,399	+				-0.2
7,428	+				-0.8
7,428	+				+1.7
7,428	+				+0.4
7,428	+				+0.3
7,429	-				-0.1
7,429	-				-0.1
7,429	-				+0.5
7,469	+				+0.1
7,469	+				+0.8
7,470	-				-0.3
7,517	+				-1.5
7,517	+				+0.2
7,518	-				+0.5
7,527	-				+0.8
7,662	+		GFF1091	0.40	+0.2
7,662	+		GFF1091	0.40	+0.8
7,663	-		GFF1091	0.40	-1.4
7,663	-		GFF1091	0.40	+0.5
7,683	+		GFF1091	0.47	-0.3
7,684	-		GFF1091	0.48	-0.0
7,684	-		GFF1091	0.48	+0.5
7,684	-		GFF1091	0.48	+0.2
7,741	+		GFF1091	0.68	+0.2
7,758	+		GFF1091	0.74	+0.0
7,758	+		GFF1091	0.74	+1.1
7,845	+				-0.7
7,845	+				-0.5
7,845	+				-1.4
7,942	+				-0.1
7,943	-				-0.1
7,943	-				-0.3
7,943	-				-0.7
8,019	+		GFF1092	0.10	-0.3
8,019	+		GFF1092	0.10	+0.5
8,019	+		GFF1092	0.10	-0.0
8,020	-		GFF1092	0.11	+0.4
8,020	-		GFF1092	0.11	+0.3
8,152	+		GFF1092	0.19	-0.3
8,153	-		GFF1092	0.19	+0.7
8,309	-		GFF1092	0.29	-0.2
8,551	+		GFF1092	0.44	+0.4
8,569	+		GFF1092	0.45	+0.6
8,577	+		GFF1092	0.46	-0.5
8,577	+		GFF1092	0.46	-1.9
8,578	-		GFF1092	0.46	+1.5
8,581	+		GFF1092	0.46	+0.7
8,581	+		GFF1092	0.46	-2.2
8,581	+		GFF1092	0.46	-1.1
8,748	+		GFF1092	0.57	+2.0
8,749	-		GFF1092	0.57	+0.0
8,783	-		GFF1092	0.59	-0.2
8,803	+		GFF1092	0.60	-0.7
8,803	+		GFF1092	0.60	-0.3
8,803	+		GFF1092	0.60	-0.2
8,803	+		GFF1092	0.60	+0.7
9,487	+				-0.4
9,487	+				+0.1
9,696	-		GFF1093	0.59	+0.4
9,696	-		GFF1093	0.59	-1.2
9,879	+				-0.3
9,880	-				-0.8
10,077	+				-0.2
10,131	-				-0.5
10,145	-				-0.9
10,145	-				+0.1
10,145	-				+0.1
10,300	-				+0.1
10,311	+				-0.3
10,361	+				+0.0
10,361	+				+0.2
10,383	+				+0.1
10,398	-				-0.6
10,398	-				+0.4