Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05171

Experiment: Galactomannan from guar 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_05169 and BACOVA_05170 overlap by 97 nucleotidesBACOVA_05170 and BACOVA_05171 are separated by 140 nucleotidesBACOVA_05171 and BACOVA_05172 are separated by 65 nucleotides BACOVA_05169: BACOVA_05169 - hypothetical protein, at 655,261 to 656,244 _05169 BACOVA_05170: BACOVA_05170 - hypothetical protein, at 656,148 to 656,315 _05170 BACOVA_05171: BACOVA_05171 - hypothetical protein, at 656,456 to 657,094 _05171 BACOVA_05172: BACOVA_05172 - valine--tRNA ligase, at 657,160 to 659,796 _05172 Position (kb) 656 657 658Strain fitness (log2 ratio) -2 -1 0 1 2at 655.478 kb on + strand, within BACOVA_05169at 655.538 kb on + strand, within BACOVA_05169at 655.621 kb on - strand, within BACOVA_05169at 655.624 kb on + strand, within BACOVA_05169at 655.625 kb on - strand, within BACOVA_05169at 655.650 kb on - strand, within BACOVA_05169at 655.650 kb on - strand, within BACOVA_05169at 655.650 kb on - strand, within BACOVA_05169at 655.662 kb on - strand, within BACOVA_05169at 655.732 kb on + strand, within BACOVA_05169at 655.810 kb on - strand, within BACOVA_05169at 655.849 kb on + strand, within BACOVA_05169at 655.894 kb on + strand, within BACOVA_05169at 655.895 kb on - strand, within BACOVA_05169at 655.905 kb on + strand, within BACOVA_05169at 655.906 kb on - strand, within BACOVA_05169at 655.908 kb on - strand, within BACOVA_05169at 655.944 kb on - strand, within BACOVA_05169at 655.950 kb on + strand, within BACOVA_05169at 655.951 kb on + strand, within BACOVA_05169at 655.991 kb on + strand, within BACOVA_05169at 656.012 kb on + strand, within BACOVA_05169at 656.020 kb on + strand, within BACOVA_05169at 656.021 kb on - strand, within BACOVA_05169at 656.024 kb on + strand, within BACOVA_05169at 656.024 kb on + strand, within BACOVA_05169at 656.082 kb on + strand, within BACOVA_05169at 656.097 kb on - strand, within BACOVA_05169at 656.097 kb on - strand, within BACOVA_05169at 656.109 kb on + strand, within BACOVA_05169at 656.127 kb on + strand, within BACOVA_05169at 656.127 kb on + strand, within BACOVA_05169at 656.128 kb on - strand, within BACOVA_05169at 656.128 kb on - strand, within BACOVA_05169at 656.137 kb on - strand, within BACOVA_05169at 656.137 kb on - strand, within BACOVA_05169at 656.140 kb on + strand, within BACOVA_05169at 656.141 kb on - strand, within BACOVA_05169at 656.141 kb on - strand, within BACOVA_05169at 656.164 kb on + strandat 656.204 kb on - strandat 656.219 kb on - strandat 656.284 kb on - strand, within BACOVA_05170at 656.340 kb on + strandat 656.379 kb on - strandat 656.379 kb on - strandat 656.411 kb on - strandat 656.418 kb on - strandat 656.419 kb on + strandat 656.420 kb on - strandat 656.461 kb on + strandat 656.521 kb on + strand, within BACOVA_05171at 656.542 kb on + strand, within BACOVA_05171at 656.543 kb on - strand, within BACOVA_05171at 656.697 kb on - strand, within BACOVA_05171at 656.713 kb on + strand, within BACOVA_05171at 656.742 kb on + strand, within BACOVA_05171at 656.743 kb on - strand, within BACOVA_05171at 656.773 kb on + strand, within BACOVA_05171at 656.830 kb on - strand, within BACOVA_05171at 656.849 kb on - strand, within BACOVA_05171at 656.862 kb on + strand, within BACOVA_05171at 656.867 kb on + strand, within BACOVA_05171at 656.872 kb on + strand, within BACOVA_05171at 656.872 kb on + strand, within BACOVA_05171at 656.873 kb on - strand, within BACOVA_05171at 656.912 kb on - strand, within BACOVA_05171at 656.958 kb on + strand, within BACOVA_05171at 656.958 kb on + strand, within BACOVA_05171at 656.958 kb on + strand, within BACOVA_05171at 656.973 kb on + strand, within BACOVA_05171at 657.047 kb on - strandat 657.047 kb on - strandat 657.126 kb on + strandat 657.133 kb on + strandat 657.133 kb on + strandat 657.133 kb on + strandat 657.143 kb on + strandat 657.143 kb on + strandat 657.143 kb on + strandat 657.143 kb on + strandat 657.145 kb on + strandat 657.145 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Galactomannan from guar 2.5 mg/mL (C)
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655,478 + BACOVA_05169 0.22 -0.5
655,538 + BACOVA_05169 0.28 -0.6
655,621 - BACOVA_05169 0.37 +1.5
655,624 + BACOVA_05169 0.37 -0.7
655,625 - BACOVA_05169 0.37 -0.5
655,650 - BACOVA_05169 0.40 +1.3
655,650 - BACOVA_05169 0.40 -0.5
655,650 - BACOVA_05169 0.40 +0.8
655,662 - BACOVA_05169 0.41 +0.3
655,732 + BACOVA_05169 0.48 +0.1
655,810 - BACOVA_05169 0.56 +0.7
655,849 + BACOVA_05169 0.60 +0.4
655,894 + BACOVA_05169 0.64 +0.9
655,895 - BACOVA_05169 0.64 +0.0
655,905 + BACOVA_05169 0.65 +1.0
655,906 - BACOVA_05169 0.66 -1.4
655,908 - BACOVA_05169 0.66 -0.6
655,944 - BACOVA_05169 0.69 +0.5
655,950 + BACOVA_05169 0.70 +0.4
655,951 + BACOVA_05169 0.70 -0.9
655,991 + BACOVA_05169 0.74 -0.5
656,012 + BACOVA_05169 0.76 +1.5
656,020 + BACOVA_05169 0.77 +0.2
656,021 - BACOVA_05169 0.77 -1.8
656,024 + BACOVA_05169 0.78 +0.3
656,024 + BACOVA_05169 0.78 -1.4
656,082 + BACOVA_05169 0.83 -0.4
656,097 - BACOVA_05169 0.85 +0.3
656,097 - BACOVA_05169 0.85 -1.3
656,109 + BACOVA_05169 0.86 +0.1
656,127 + BACOVA_05169 0.88 +0.0
656,127 + BACOVA_05169 0.88 +0.7
656,128 - BACOVA_05169 0.88 -0.7
656,128 - BACOVA_05169 0.88 +0.9
656,137 - BACOVA_05169 0.89 +0.6
656,137 - BACOVA_05169 0.89 -1.8
656,140 + BACOVA_05169 0.89 -1.3
656,141 - BACOVA_05169 0.89 -2.0
656,141 - BACOVA_05169 0.89 -0.1
656,164 + -0.9
656,204 - -1.2
656,219 - +1.3
656,284 - BACOVA_05170 0.81 +0.3
656,340 + -0.7
656,379 - -0.5
656,379 - -1.0
656,411 - -0.1
656,418 - -1.4
656,419 + +0.1
656,420 - -1.2
656,461 + +0.2
656,521 + BACOVA_05171 0.10 -1.0
656,542 + BACOVA_05171 0.13 -0.3
656,543 - BACOVA_05171 0.14 +0.4
656,697 - BACOVA_05171 0.38 +0.3
656,713 + BACOVA_05171 0.40 -0.1
656,742 + BACOVA_05171 0.45 -1.0
656,743 - BACOVA_05171 0.45 -1.5
656,773 + BACOVA_05171 0.50 +0.5
656,830 - BACOVA_05171 0.59 -1.4
656,849 - BACOVA_05171 0.62 +0.2
656,862 + BACOVA_05171 0.64 -0.0
656,867 + BACOVA_05171 0.64 +0.9
656,872 + BACOVA_05171 0.65 +0.1
656,872 + BACOVA_05171 0.65 +0.3
656,873 - BACOVA_05171 0.65 +2.4
656,912 - BACOVA_05171 0.71 +0.6
656,958 + BACOVA_05171 0.79 +0.2
656,958 + BACOVA_05171 0.79 -1.2
656,958 + BACOVA_05171 0.79 -2.0
656,973 + BACOVA_05171 0.81 -0.3
657,047 - +1.1
657,047 - +0.8
657,126 + -1.3
657,133 + -1.4
657,133 + -0.9
657,133 + -1.7
657,143 + -1.3
657,143 + -0.5
657,143 + +1.4
657,143 + -0.4
657,145 + -0.7
657,145 + +0.2

Or see this region's nucleotide sequence