Experiment: Galactomannan from guar 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04719 and BACOVA_04720 are separated by 5 nucleotides BACOVA_04720 and BACOVA_04721 are separated by 34 nucleotides BACOVA_04721 and BACOVA_04722 are separated by 12 nucleotides
BACOVA_04719: BACOVA_04719 - hypothetical protein, at 81,574 to 83,262
_04719
BACOVA_04720: BACOVA_04720 - hypothetical protein, at 83,268 to 83,924
_04720
BACOVA_04721: BACOVA_04721 - hypothetical protein, at 83,959 to 84,135
_04721
BACOVA_04722: BACOVA_04722 - mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase, at 84,148 to 85,704
_04722
Position (kb) 83
84
85 Strain fitness (log2 ratio) -2
-1
0
1 at 83.039 kb on + strand, within BACOVA_04719 at 83.070 kb on + strand, within BACOVA_04719 at 83.071 kb on - strand, within BACOVA_04719 at 83.071 kb on - strand, within BACOVA_04719 at 83.071 kb on - strand, within BACOVA_04719 at 83.090 kb on + strand, within BACOVA_04719 at 83.266 kb on - strand at 83.279 kb on - strand at 83.282 kb on + strand at 83.283 kb on - strand at 83.370 kb on + strand, within BACOVA_04720 at 83.385 kb on + strand, within BACOVA_04720 at 83.386 kb on - strand, within BACOVA_04720 at 83.386 kb on - strand, within BACOVA_04720 at 83.496 kb on - strand, within BACOVA_04720 at 83.496 kb on - strand, within BACOVA_04720 at 83.496 kb on - strand, within BACOVA_04720 at 83.496 kb on - strand, within BACOVA_04720 at 83.497 kb on + strand, within BACOVA_04720 at 83.514 kb on - strand, within BACOVA_04720 at 83.656 kb on + strand, within BACOVA_04720 at 83.656 kb on + strand, within BACOVA_04720 at 83.744 kb on + strand, within BACOVA_04720 at 83.748 kb on - strand, within BACOVA_04720 at 83.748 kb on - strand, within BACOVA_04720 at 83.864 kb on + strand at 83.870 kb on + strand at 83.870 kb on + strand at 83.870 kb on + strand at 83.871 kb on - strand at 83.921 kb on - strand at 83.955 kb on - strand at 83.974 kb on + strand at 83.974 kb on + strand at 84.008 kb on - strand, within BACOVA_04721 at 84.109 kb on + strand, within BACOVA_04721 at 84.109 kb on + strand, within BACOVA_04721 at 84.109 kb on + strand, within BACOVA_04721 at 84.115 kb on + strand, within BACOVA_04721 at 84.116 kb on - strand, within BACOVA_04721 at 84.130 kb on + strand at 84.130 kb on + strand at 84.131 kb on - strand at 84.131 kb on - strand at 84.150 kb on - strand at 84.234 kb on + strand at 84.244 kb on - strand at 84.655 kb on - strand, within BACOVA_04722 at 84.671 kb on + strand, within BACOVA_04722 at 84.746 kb on + strand, within BACOVA_04722 at 84.760 kb on + strand, within BACOVA_04722 at 84.760 kb on + strand, within BACOVA_04722 at 84.760 kb on + strand, within BACOVA_04722 at 84.761 kb on - strand, within BACOVA_04722 at 84.785 kb on + strand, within BACOVA_04722 at 84.785 kb on + strand, within BACOVA_04722 at 84.789 kb on + strand, within BACOVA_04722 at 84.789 kb on + strand, within BACOVA_04722 at 84.789 kb on + strand, within BACOVA_04722 at 84.914 kb on + strand, within BACOVA_04722 at 84.914 kb on + strand, within BACOVA_04722 at 84.915 kb on - strand, within BACOVA_04722 at 84.915 kb on - strand, within BACOVA_04722 at 84.915 kb on - strand, within BACOVA_04722 at 84.915 kb on - strand, within BACOVA_04722 at 84.918 kb on + strand, within BACOVA_04722 at 84.925 kb on + strand, within BACOVA_04722 at 84.926 kb on - strand, within BACOVA_04722 at 84.950 kb on + strand, within BACOVA_04722 at 84.951 kb on - strand, within BACOVA_04722 at 84.991 kb on - strand, within BACOVA_04722 at 85.054 kb on + strand, within BACOVA_04722 at 85.054 kb on + strand, within BACOVA_04722 at 85.054 kb on + strand, within BACOVA_04722 at 85.054 kb on + strand, within BACOVA_04722 at 85.055 kb on - strand, within BACOVA_04722 at 85.055 kb on - strand, within BACOVA_04722 at 85.125 kb on + strand, within BACOVA_04722
Per-strain Table
Position Strand Gene LocusTag Fraction Galactomannan from guar 2.5 mg/mL (C) remove 83,039 + BACOVA_04719 0.87 +1.0 83,070 + BACOVA_04719 0.89 +0.0 83,071 - BACOVA_04719 0.89 -0.8 83,071 - BACOVA_04719 0.89 +0.4 83,071 - BACOVA_04719 0.89 +0.2 83,090 + BACOVA_04719 0.90 +0.8 83,266 - -1.2 83,279 - -1.5 83,282 + -0.5 83,283 - +0.0 83,370 + BACOVA_04720 0.16 -1.2 83,385 + BACOVA_04720 0.18 +1.4 83,386 - BACOVA_04720 0.18 -1.5 83,386 - BACOVA_04720 0.18 +0.1 83,496 - BACOVA_04720 0.35 +0.0 83,496 - BACOVA_04720 0.35 +0.7 83,496 - BACOVA_04720 0.35 -1.5 83,496 - BACOVA_04720 0.35 -0.5 83,497 + BACOVA_04720 0.35 +0.2 83,514 - BACOVA_04720 0.37 +0.2 83,656 + BACOVA_04720 0.59 -0.9 83,656 + BACOVA_04720 0.59 -0.2 83,744 + BACOVA_04720 0.72 +0.2 83,748 - BACOVA_04720 0.73 -0.3 83,748 - BACOVA_04720 0.73 +0.5 83,864 + +0.6 83,870 + -1.2 83,870 + -0.3 83,870 + -0.3 83,871 - +1.0 83,921 - +0.6 83,955 - -0.5 83,974 + -0.6 83,974 + -0.4 84,008 - BACOVA_04721 0.28 -0.9 84,109 + BACOVA_04721 0.85 +0.2 84,109 + BACOVA_04721 0.85 +0.1 84,109 + BACOVA_04721 0.85 -2.0 84,115 + BACOVA_04721 0.88 -1.0 84,116 - BACOVA_04721 0.89 -0.2 84,130 + -0.6 84,130 + +0.2 84,131 - -0.9 84,131 - -1.2 84,150 - -1.5 84,234 + -0.3 84,244 - +0.2 84,655 - BACOVA_04722 0.33 -1.0 84,671 + BACOVA_04722 0.34 -1.3 84,746 + BACOVA_04722 0.38 -0.6 84,760 + BACOVA_04722 0.39 -1.5 84,760 + BACOVA_04722 0.39 +0.4 84,760 + BACOVA_04722 0.39 -0.6 84,761 - BACOVA_04722 0.39 -0.1 84,785 + BACOVA_04722 0.41 -0.1 84,785 + BACOVA_04722 0.41 -0.5 84,789 + BACOVA_04722 0.41 +0.3 84,789 + BACOVA_04722 0.41 +0.3 84,789 + BACOVA_04722 0.41 -0.0 84,914 + BACOVA_04722 0.49 -1.2 84,914 + BACOVA_04722 0.49 +0.5 84,915 - BACOVA_04722 0.49 -0.1 84,915 - BACOVA_04722 0.49 -0.4 84,915 - BACOVA_04722 0.49 +0.5 84,915 - BACOVA_04722 0.49 -1.4 84,918 + BACOVA_04722 0.49 -0.9 84,925 + BACOVA_04722 0.50 +0.3 84,926 - BACOVA_04722 0.50 +0.3 84,950 + BACOVA_04722 0.52 -1.0 84,951 - BACOVA_04722 0.52 +0.3 84,991 - BACOVA_04722 0.54 -0.7 85,054 + BACOVA_04722 0.58 -1.0 85,054 + BACOVA_04722 0.58 -2.1 85,054 + BACOVA_04722 0.58 -0.2 85,054 + BACOVA_04722 0.58 +0.0 85,055 - BACOVA_04722 0.58 +0.2 85,055 - BACOVA_04722 0.58 +0.5 85,125 + BACOVA_04722 0.63 -1.8
Or see this region's nucleotide sequence