Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04463

Experiment: Galactomannan from guar 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04460 and BACOVA_04461 are separated by 10 nucleotidesBACOVA_04461 and BACOVA_04463 are separated by 14 nucleotidesBACOVA_04463 and BACOVA_04462 overlap by 2 nucleotides BACOVA_04460: BACOVA_04460 - hypothetical protein, at 372,959 to 373,504 _04460 BACOVA_04461: BACOVA_04461 - translocator protein, LysE family, at 373,515 to 374,267 _04461 BACOVA_04463: BACOVA_04463 - hypothetical protein, at 374,282 to 374,428 _04463 BACOVA_04462: BACOVA_04462 - putative phosphoribosylformylglycinamidine synthase, at 374,427 to 378,131 _04462 Position (kb) 374 375Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 373.389 kb on - strand, within BACOVA_04460at 373.448 kb on - strand, within BACOVA_04460at 373.510 kb on - strandat 373.510 kb on - strandat 373.517 kb on - strandat 373.520 kb on - strandat 374.207 kb on - strandat 374.207 kb on - strandat 374.209 kb on - strandat 374.238 kb on - strandat 374.239 kb on + strandat 374.239 kb on + strandat 374.240 kb on - strandat 374.242 kb on - strandat 374.242 kb on - strandat 374.252 kb on + strandat 374.253 kb on - strandat 374.263 kb on + strandat 374.264 kb on - strandat 374.274 kb on + strandat 374.274 kb on + strandat 374.280 kb on + strandat 374.280 kb on + strandat 374.284 kb on - strandat 374.287 kb on + strandat 374.287 kb on + strandat 374.292 kb on + strandat 374.339 kb on + strand, within BACOVA_04463at 374.339 kb on + strand, within BACOVA_04463at 374.419 kb on + strandat 374.421 kb on + strandat 374.422 kb on - strandat 374.507 kb on + strandat 374.508 kb on - strandat 374.650 kb on + strandat 374.650 kb on + strandat 374.651 kb on - strandat 374.651 kb on - strandat 374.667 kb on + strandat 374.679 kb on - strandat 374.721 kb on + strandat 374.778 kb on + strandat 374.779 kb on - strandat 374.779 kb on - strandat 374.857 kb on + strand, within BACOVA_04462at 374.858 kb on - strand, within BACOVA_04462at 374.858 kb on - strand, within BACOVA_04462at 374.896 kb on + strand, within BACOVA_04462at 374.897 kb on - strand, within BACOVA_04462at 374.957 kb on + strand, within BACOVA_04462at 375.002 kb on + strand, within BACOVA_04462at 375.011 kb on + strand, within BACOVA_04462at 375.011 kb on + strand, within BACOVA_04462at 375.034 kb on + strand, within BACOVA_04462at 375.045 kb on + strand, within BACOVA_04462at 375.048 kb on - strand, within BACOVA_04462at 375.053 kb on + strand, within BACOVA_04462at 375.058 kb on + strand, within BACOVA_04462at 375.059 kb on - strand, within BACOVA_04462at 375.131 kb on - strand, within BACOVA_04462at 375.149 kb on + strand, within BACOVA_04462at 375.150 kb on - strand, within BACOVA_04462at 375.182 kb on + strand, within BACOVA_04462at 375.186 kb on - strand, within BACOVA_04462at 375.242 kb on + strand, within BACOVA_04462at 375.255 kb on - strand, within BACOVA_04462at 375.279 kb on - strand, within BACOVA_04462at 375.288 kb on + strand, within BACOVA_04462at 375.289 kb on - strand, within BACOVA_04462at 375.289 kb on - strand, within BACOVA_04462at 375.360 kb on + strand, within BACOVA_04462at 375.383 kb on + strand, within BACOVA_04462at 375.384 kb on - strand, within BACOVA_04462at 375.384 kb on - strand, within BACOVA_04462

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Per-strain Table

Position Strand Gene LocusTag Fraction Galactomannan from guar 2.5 mg/mL (C)
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373,389 - BACOVA_04460 0.79 -0.8
373,448 - BACOVA_04460 0.90 +0.3
373,510 - -0.6
373,510 - -0.1
373,517 - -2.1
373,520 - +0.4
374,207 - -0.3
374,207 - -0.3
374,209 - +0.7
374,238 - +0.1
374,239 + -1.8
374,239 + -0.6
374,240 - +0.4
374,242 - -1.3
374,242 - +0.2
374,252 + -0.1
374,253 - -0.2
374,263 + +0.0
374,264 - +0.3
374,274 + +0.4
374,274 + -2.6
374,280 + -0.9
374,280 + +0.5
374,284 - +0.5
374,287 + -0.4
374,287 + +0.5
374,292 + -0.1
374,339 + BACOVA_04463 0.39 -1.9
374,339 + BACOVA_04463 0.39 +0.9
374,419 + -1.3
374,421 + -3.3
374,422 - -3.0
374,507 + -2.5
374,508 - -2.1
374,650 + -3.4
374,650 + -2.1
374,651 - -3.5
374,651 - -3.0
374,667 + -2.2
374,679 - -3.2
374,721 + -4.5
374,778 + -3.8
374,779 - -2.1
374,779 - -2.3
374,857 + BACOVA_04462 0.12 -3.9
374,858 - BACOVA_04462 0.12 -4.3
374,858 - BACOVA_04462 0.12 -4.5
374,896 + BACOVA_04462 0.13 -3.7
374,897 - BACOVA_04462 0.13 -3.3
374,957 + BACOVA_04462 0.14 -2.0
375,002 + BACOVA_04462 0.16 -2.1
375,011 + BACOVA_04462 0.16 -1.7
375,011 + BACOVA_04462 0.16 -3.8
375,034 + BACOVA_04462 0.16 -3.2
375,045 + BACOVA_04462 0.17 -3.5
375,048 - BACOVA_04462 0.17 -3.1
375,053 + BACOVA_04462 0.17 -1.9
375,058 + BACOVA_04462 0.17 -3.2
375,059 - BACOVA_04462 0.17 -1.6
375,131 - BACOVA_04462 0.19 -2.1
375,149 + BACOVA_04462 0.19 -3.7
375,150 - BACOVA_04462 0.20 -2.7
375,182 + BACOVA_04462 0.20 -2.5
375,186 - BACOVA_04462 0.20 -1.6
375,242 + BACOVA_04462 0.22 -4.3
375,255 - BACOVA_04462 0.22 +0.0
375,279 - BACOVA_04462 0.23 -2.6
375,288 + BACOVA_04462 0.23 -3.5
375,289 - BACOVA_04462 0.23 -1.6
375,289 - BACOVA_04462 0.23 -0.3
375,360 + BACOVA_04462 0.25 -2.8
375,383 + BACOVA_04462 0.26 -2.0
375,384 - BACOVA_04462 0.26 -3.2
375,384 - BACOVA_04462 0.26 -3.0

Or see this region's nucleotide sequence