Experiment: Galactomannan from guar 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04186 and BACOVA_04187 are separated by 36 nucleotides BACOVA_04187 and BACOVA_04188 are separated by 6 nucleotides
BACOVA_04186: BACOVA_04186 - TonB-linked outer membrane protein, SusC/RagA family, at 59,846 to 63,136
_04186
BACOVA_04187: BACOVA_04187 - transporter, major facilitator family protein, at 63,173 to 64,405
_04187
BACOVA_04188: BACOVA_04188 - BNR/Asp-box repeat protein, at 64,412 to 66,052
_04188
Position (kb) 63
64
65 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 62.213 kb on - strand, within BACOVA_04186 at 62.257 kb on + strand, within BACOVA_04186 at 62.258 kb on - strand, within BACOVA_04186 at 62.258 kb on - strand, within BACOVA_04186 at 62.258 kb on - strand, within BACOVA_04186 at 62.259 kb on + strand, within BACOVA_04186 at 62.278 kb on + strand, within BACOVA_04186 at 62.294 kb on - strand, within BACOVA_04186 at 62.294 kb on - strand, within BACOVA_04186 at 62.312 kb on - strand, within BACOVA_04186 at 62.312 kb on - strand, within BACOVA_04186 at 62.313 kb on + strand, within BACOVA_04186 at 62.314 kb on - strand, within BACOVA_04186 at 62.330 kb on + strand, within BACOVA_04186 at 62.364 kb on + strand, within BACOVA_04186 at 62.365 kb on - strand, within BACOVA_04186 at 62.368 kb on + strand, within BACOVA_04186 at 62.368 kb on + strand, within BACOVA_04186 at 62.369 kb on - strand, within BACOVA_04186 at 62.369 kb on - strand, within BACOVA_04186 at 62.427 kb on - strand, within BACOVA_04186 at 62.429 kb on - strand, within BACOVA_04186 at 62.429 kb on - strand, within BACOVA_04186 at 62.455 kb on + strand, within BACOVA_04186 at 62.456 kb on - strand, within BACOVA_04186 at 62.456 kb on - strand, within BACOVA_04186 at 62.456 kb on - strand, within BACOVA_04186 at 62.462 kb on - strand, within BACOVA_04186 at 62.543 kb on + strand, within BACOVA_04186 at 62.544 kb on - strand, within BACOVA_04186 at 62.544 kb on - strand, within BACOVA_04186 at 62.544 kb on - strand, within BACOVA_04186 at 62.554 kb on + strand, within BACOVA_04186 at 62.555 kb on - strand, within BACOVA_04186 at 62.561 kb on + strand, within BACOVA_04186 at 62.642 kb on + strand, within BACOVA_04186 at 62.642 kb on + strand, within BACOVA_04186 at 62.648 kb on + strand, within BACOVA_04186 at 62.675 kb on + strand, within BACOVA_04186 at 62.723 kb on - strand, within BACOVA_04186 at 62.723 kb on - strand, within BACOVA_04186 at 62.731 kb on + strand, within BACOVA_04186 at 62.738 kb on - strand, within BACOVA_04186 at 62.747 kb on + strand, within BACOVA_04186 at 62.751 kb on - strand, within BACOVA_04186 at 62.767 kb on + strand, within BACOVA_04186 at 62.768 kb on - strand, within BACOVA_04186 at 62.768 kb on - strand, within BACOVA_04186 at 62.831 kb on - strand at 62.845 kb on + strand at 62.849 kb on - strand at 62.849 kb on - strand at 62.849 kb on - strand at 62.915 kb on - strand at 62.941 kb on + strand at 62.944 kb on + strand at 62.951 kb on - strand at 62.964 kb on - strand at 63.008 kb on + strand at 63.012 kb on - strand at 63.026 kb on + strand at 63.026 kb on + strand at 63.026 kb on + strand at 63.028 kb on + strand at 63.028 kb on + strand at 63.028 kb on + strand at 63.040 kb on + strand at 63.077 kb on + strand at 63.077 kb on + strand at 63.086 kb on + strand at 63.086 kb on + strand at 63.095 kb on + strand at 63.116 kb on - strand at 63.163 kb on + strand at 63.163 kb on + strand at 63.174 kb on + strand at 63.174 kb on + strand at 63.185 kb on - strand at 63.229 kb on + strand at 63.236 kb on + strand at 63.244 kb on + strand at 63.307 kb on + strand, within BACOVA_04187 at 63.326 kb on + strand, within BACOVA_04187 at 63.337 kb on + strand, within BACOVA_04187 at 63.337 kb on + strand, within BACOVA_04187 at 63.338 kb on - strand, within BACOVA_04187 at 63.338 kb on - strand, within BACOVA_04187 at 63.338 kb on - strand, within BACOVA_04187 at 63.346 kb on + strand, within BACOVA_04187 at 63.347 kb on - strand, within BACOVA_04187 at 63.352 kb on - strand, within BACOVA_04187 at 63.395 kb on - strand, within BACOVA_04187 at 63.395 kb on - strand, within BACOVA_04187 at 63.400 kb on + strand, within BACOVA_04187 at 63.403 kb on + strand, within BACOVA_04187 at 63.404 kb on - strand, within BACOVA_04187 at 63.442 kb on + strand, within BACOVA_04187 at 63.467 kb on - strand, within BACOVA_04187 at 63.505 kb on + strand, within BACOVA_04187 at 63.521 kb on - strand, within BACOVA_04187 at 63.529 kb on + strand, within BACOVA_04187 at 63.529 kb on + strand, within BACOVA_04187 at 63.530 kb on - strand, within BACOVA_04187 at 63.531 kb on + strand, within BACOVA_04187 at 63.531 kb on + strand, within BACOVA_04187 at 63.533 kb on + strand, within BACOVA_04187 at 63.533 kb on + strand, within BACOVA_04187 at 63.554 kb on + strand, within BACOVA_04187 at 63.573 kb on - strand, within BACOVA_04187 at 63.573 kb on - strand, within BACOVA_04187 at 63.574 kb on + strand, within BACOVA_04187 at 63.575 kb on - strand, within BACOVA_04187 at 63.575 kb on - strand, within BACOVA_04187 at 63.576 kb on + strand, within BACOVA_04187 at 63.576 kb on + strand, within BACOVA_04187 at 63.576 kb on + strand, within BACOVA_04187 at 63.617 kb on - strand, within BACOVA_04187 at 63.622 kb on + strand, within BACOVA_04187 at 63.631 kb on + strand, within BACOVA_04187 at 63.631 kb on + strand, within BACOVA_04187 at 63.631 kb on + strand, within BACOVA_04187 at 63.632 kb on - strand, within BACOVA_04187 at 63.632 kb on - strand, within BACOVA_04187 at 63.659 kb on + strand, within BACOVA_04187 at 63.660 kb on - strand, within BACOVA_04187 at 63.660 kb on - strand, within BACOVA_04187 at 63.740 kb on - strand, within BACOVA_04187 at 63.835 kb on + strand, within BACOVA_04187 at 63.859 kb on + strand, within BACOVA_04187 at 63.860 kb on - strand, within BACOVA_04187 at 63.867 kb on + strand, within BACOVA_04187 at 63.878 kb on + strand, within BACOVA_04187 at 63.878 kb on + strand, within BACOVA_04187 at 63.878 kb on + strand, within BACOVA_04187 at 63.904 kb on + strand, within BACOVA_04187 at 63.905 kb on - strand, within BACOVA_04187 at 63.916 kb on - strand, within BACOVA_04187 at 63.931 kb on + strand, within BACOVA_04187 at 63.932 kb on - strand, within BACOVA_04187 at 63.963 kb on + strand, within BACOVA_04187 at 63.981 kb on - strand, within BACOVA_04187 at 64.006 kb on + strand, within BACOVA_04187 at 64.046 kb on + strand, within BACOVA_04187 at 64.050 kb on + strand, within BACOVA_04187 at 64.063 kb on + strand, within BACOVA_04187 at 64.072 kb on + strand, within BACOVA_04187 at 64.125 kb on + strand, within BACOVA_04187 at 64.125 kb on + strand, within BACOVA_04187 at 64.126 kb on - strand, within BACOVA_04187 at 64.153 kb on + strand, within BACOVA_04187 at 64.153 kb on + strand, within BACOVA_04187 at 64.154 kb on - strand, within BACOVA_04187 at 64.157 kb on + strand, within BACOVA_04187 at 64.158 kb on - strand, within BACOVA_04187 at 64.158 kb on - strand, within BACOVA_04187 at 64.181 kb on - strand, within BACOVA_04187 at 64.236 kb on - strand, within BACOVA_04187 at 64.236 kb on - strand, within BACOVA_04187 at 64.333 kb on - strand at 64.397 kb on - strand at 64.444 kb on + strand at 64.474 kb on - strand at 64.475 kb on + strand at 64.476 kb on - strand at 64.478 kb on + strand at 64.480 kb on + strand at 64.480 kb on + strand at 64.480 kb on + strand at 64.485 kb on - strand at 64.500 kb on - strand at 64.528 kb on + strand at 64.620 kb on + strand, within BACOVA_04188 at 64.620 kb on + strand, within BACOVA_04188 at 64.624 kb on + strand, within BACOVA_04188 at 64.675 kb on - strand, within BACOVA_04188 at 64.675 kb on - strand, within BACOVA_04188 at 64.705 kb on + strand, within BACOVA_04188 at 64.706 kb on - strand, within BACOVA_04188 at 64.712 kb on + strand, within BACOVA_04188 at 64.765 kb on + strand, within BACOVA_04188 at 64.766 kb on - strand, within BACOVA_04188 at 64.864 kb on + strand, within BACOVA_04188 at 64.933 kb on + strand, within BACOVA_04188 at 64.933 kb on + strand, within BACOVA_04188 at 64.934 kb on - strand, within BACOVA_04188 at 64.934 kb on - strand, within BACOVA_04188 at 64.982 kb on + strand, within BACOVA_04188 at 64.982 kb on + strand, within BACOVA_04188 at 65.005 kb on + strand, within BACOVA_04188 at 65.034 kb on - strand, within BACOVA_04188 at 65.066 kb on + strand, within BACOVA_04188 at 65.067 kb on - strand, within BACOVA_04188 at 65.068 kb on + strand, within BACOVA_04188 at 65.068 kb on + strand, within BACOVA_04188 at 65.089 kb on + strand, within BACOVA_04188 at 65.090 kb on - strand, within BACOVA_04188 at 65.120 kb on - strand, within BACOVA_04188 at 65.165 kb on - strand, within BACOVA_04188 at 65.165 kb on - strand, within BACOVA_04188 at 65.214 kb on - strand, within BACOVA_04188 at 65.252 kb on + strand, within BACOVA_04188 at 65.265 kb on + strand, within BACOVA_04188 at 65.265 kb on + strand, within BACOVA_04188 at 65.266 kb on - strand, within BACOVA_04188 at 65.266 kb on - strand, within BACOVA_04188 at 65.269 kb on + strand, within BACOVA_04188 at 65.270 kb on - strand, within BACOVA_04188 at 65.285 kb on - strand, within BACOVA_04188 at 65.319 kb on + strand, within BACOVA_04188 at 65.319 kb on + strand, within BACOVA_04188 at 65.330 kb on + strand, within BACOVA_04188 at 65.396 kb on - strand, within BACOVA_04188
Per-strain Table
Position Strand Gene LocusTag Fraction Galactomannan from guar 2.5 mg/mL (C) remove 62,213 - BACOVA_04186 0.72 +0.6 62,257 + BACOVA_04186 0.73 +0.4 62,258 - BACOVA_04186 0.73 +0.1 62,258 - BACOVA_04186 0.73 -1.4 62,258 - BACOVA_04186 0.73 -1.8 62,259 + BACOVA_04186 0.73 -1.1 62,278 + BACOVA_04186 0.74 -1.1 62,294 - BACOVA_04186 0.74 +1.4 62,294 - BACOVA_04186 0.74 +0.6 62,312 - BACOVA_04186 0.75 -0.2 62,312 - BACOVA_04186 0.75 -0.3 62,313 + BACOVA_04186 0.75 +0.6 62,314 - BACOVA_04186 0.75 -0.6 62,330 + BACOVA_04186 0.75 +1.2 62,364 + BACOVA_04186 0.77 -1.8 62,365 - BACOVA_04186 0.77 -0.2 62,368 + BACOVA_04186 0.77 -0.1 62,368 + BACOVA_04186 0.77 +0.2 62,369 - BACOVA_04186 0.77 +0.6 62,369 - BACOVA_04186 0.77 +0.0 62,427 - BACOVA_04186 0.78 +1.4 62,429 - BACOVA_04186 0.78 +1.5 62,429 - BACOVA_04186 0.78 +1.5 62,455 + BACOVA_04186 0.79 -1.7 62,456 - BACOVA_04186 0.79 -0.9 62,456 - BACOVA_04186 0.79 +0.7 62,456 - BACOVA_04186 0.79 +0.4 62,462 - BACOVA_04186 0.79 -0.8 62,543 + BACOVA_04186 0.82 -0.2 62,544 - BACOVA_04186 0.82 +2.0 62,544 - BACOVA_04186 0.82 +0.0 62,544 - BACOVA_04186 0.82 -1.2 62,554 + BACOVA_04186 0.82 -0.6 62,555 - BACOVA_04186 0.82 +0.4 62,561 + BACOVA_04186 0.82 -0.6 62,642 + BACOVA_04186 0.85 -0.6 62,642 + BACOVA_04186 0.85 -1.0 62,648 + BACOVA_04186 0.85 +0.2 62,675 + BACOVA_04186 0.86 +0.3 62,723 - BACOVA_04186 0.87 -0.7 62,723 - BACOVA_04186 0.87 +1.8 62,731 + BACOVA_04186 0.88 +0.8 62,738 - BACOVA_04186 0.88 +0.4 62,747 + BACOVA_04186 0.88 -1.2 62,751 - BACOVA_04186 0.88 -0.9 62,767 + BACOVA_04186 0.89 -0.5 62,768 - BACOVA_04186 0.89 -1.2 62,768 - BACOVA_04186 0.89 +0.3 62,831 - +0.3 62,845 + -0.6 62,849 - -0.5 62,849 - -0.6 62,849 - -0.8 62,915 - +0.7 62,941 + +0.0 62,944 + -1.0 62,951 - +0.8 62,964 - -0.9 63,008 + +0.1 63,012 - -1.6 63,026 + +0.3 63,026 + -0.8 63,026 + +0.9 63,028 + +0.2 63,028 + -1.2 63,028 + -0.1 63,040 + -0.1 63,077 + +0.2 63,077 + +0.0 63,086 + +1.2 63,086 + -0.8 63,095 + +0.5 63,116 - -1.0 63,163 + +0.1 63,163 + -1.2 63,174 + +1.4 63,174 + -0.8 63,185 - -0.3 63,229 + -0.5 63,236 + +0.4 63,244 + -0.3 63,307 + BACOVA_04187 0.11 -2.9 63,326 + BACOVA_04187 0.12 -1.3 63,337 + BACOVA_04187 0.13 -0.5 63,337 + BACOVA_04187 0.13 +0.8 63,338 - BACOVA_04187 0.13 -2.3 63,338 - BACOVA_04187 0.13 +0.4 63,338 - BACOVA_04187 0.13 -0.6 63,346 + BACOVA_04187 0.14 -0.7 63,347 - BACOVA_04187 0.14 -0.3 63,352 - BACOVA_04187 0.15 -0.2 63,395 - BACOVA_04187 0.18 +0.7 63,395 - BACOVA_04187 0.18 -0.2 63,400 + BACOVA_04187 0.18 +0.3 63,403 + BACOVA_04187 0.19 +2.0 63,404 - BACOVA_04187 0.19 -0.3 63,442 + BACOVA_04187 0.22 -0.2 63,467 - BACOVA_04187 0.24 -1.4 63,505 + BACOVA_04187 0.27 -0.8 63,521 - BACOVA_04187 0.28 -2.2 63,529 + BACOVA_04187 0.29 -1.8 63,529 + BACOVA_04187 0.29 -1.6 63,530 - BACOVA_04187 0.29 +0.4 63,531 + BACOVA_04187 0.29 +1.2 63,531 + BACOVA_04187 0.29 -1.3 63,533 + BACOVA_04187 0.29 -0.7 63,533 + BACOVA_04187 0.29 +0.7 63,554 + BACOVA_04187 0.31 -0.5 63,573 - BACOVA_04187 0.32 -0.6 63,573 - BACOVA_04187 0.32 +0.7 63,574 + BACOVA_04187 0.33 -1.4 63,575 - BACOVA_04187 0.33 -0.3 63,575 - BACOVA_04187 0.33 +0.4 63,576 + BACOVA_04187 0.33 -1.6 63,576 + BACOVA_04187 0.33 +0.8 63,576 + BACOVA_04187 0.33 -1.3 63,617 - BACOVA_04187 0.36 -1.8 63,622 + BACOVA_04187 0.36 -2.4 63,631 + BACOVA_04187 0.37 +0.4 63,631 + BACOVA_04187 0.37 +0.2 63,631 + BACOVA_04187 0.37 -0.8 63,632 - BACOVA_04187 0.37 +1.0 63,632 - BACOVA_04187 0.37 -1.8 63,659 + BACOVA_04187 0.39 -0.1 63,660 - BACOVA_04187 0.39 +0.7 63,660 - BACOVA_04187 0.39 +0.0 63,740 - BACOVA_04187 0.46 -2.3 63,835 + BACOVA_04187 0.54 -1.3 63,859 + BACOVA_04187 0.56 -1.1 63,860 - BACOVA_04187 0.56 -0.4 63,867 + BACOVA_04187 0.56 -0.1 63,878 + BACOVA_04187 0.57 -0.1 63,878 + BACOVA_04187 0.57 -0.7 63,878 + BACOVA_04187 0.57 -0.1 63,904 + BACOVA_04187 0.59 +0.0 63,905 - BACOVA_04187 0.59 +1.0 63,916 - BACOVA_04187 0.60 -1.6 63,931 + BACOVA_04187 0.61 -1.1 63,932 - BACOVA_04187 0.62 -1.0 63,963 + BACOVA_04187 0.64 -0.4 63,981 - BACOVA_04187 0.66 +1.4 64,006 + BACOVA_04187 0.68 +0.0 64,046 + BACOVA_04187 0.71 -1.2 64,050 + BACOVA_04187 0.71 +0.1 64,063 + BACOVA_04187 0.72 +0.4 64,072 + BACOVA_04187 0.73 -1.2 64,125 + BACOVA_04187 0.77 +0.1 64,125 + BACOVA_04187 0.77 +0.4 64,126 - BACOVA_04187 0.77 +1.0 64,153 + BACOVA_04187 0.79 +0.2 64,153 + BACOVA_04187 0.79 +0.1 64,154 - BACOVA_04187 0.80 -0.8 64,157 + BACOVA_04187 0.80 -2.2 64,158 - BACOVA_04187 0.80 -0.9 64,158 - BACOVA_04187 0.80 +0.3 64,181 - BACOVA_04187 0.82 -1.1 64,236 - BACOVA_04187 0.86 -0.6 64,236 - BACOVA_04187 0.86 +1.8 64,333 - +0.2 64,397 - -0.6 64,444 + -0.6 64,474 - +0.9 64,475 + +0.2 64,476 - -1.2 64,478 + -0.9 64,480 + +0.6 64,480 + -0.3 64,480 + +0.2 64,485 - -0.6 64,500 - -1.6 64,528 + +0.3 64,620 + BACOVA_04188 0.13 +0.9 64,620 + BACOVA_04188 0.13 -0.3 64,624 + BACOVA_04188 0.13 +0.2 64,675 - BACOVA_04188 0.16 -1.3 64,675 - BACOVA_04188 0.16 +0.4 64,705 + BACOVA_04188 0.18 -0.2 64,706 - BACOVA_04188 0.18 -1.8 64,712 + BACOVA_04188 0.18 -0.8 64,765 + BACOVA_04188 0.22 +1.0 64,766 - BACOVA_04188 0.22 -0.7 64,864 + BACOVA_04188 0.28 +0.5 64,933 + BACOVA_04188 0.32 +0.0 64,933 + BACOVA_04188 0.32 -3.9 64,934 - BACOVA_04188 0.32 +1.3 64,934 - BACOVA_04188 0.32 -0.8 64,982 + BACOVA_04188 0.35 +0.6 64,982 + BACOVA_04188 0.35 -1.3 65,005 + BACOVA_04188 0.36 -0.9 65,034 - BACOVA_04188 0.38 +0.5 65,066 + BACOVA_04188 0.40 -2.2 65,067 - BACOVA_04188 0.40 -1.5 65,068 + BACOVA_04188 0.40 +0.4 65,068 + BACOVA_04188 0.40 +0.0 65,089 + BACOVA_04188 0.41 -0.4 65,090 - BACOVA_04188 0.41 +0.5 65,120 - BACOVA_04188 0.43 +0.6 65,165 - BACOVA_04188 0.46 -0.9 65,165 - BACOVA_04188 0.46 -2.0 65,214 - BACOVA_04188 0.49 +0.4 65,252 + BACOVA_04188 0.51 -1.6 65,265 + BACOVA_04188 0.52 +0.0 65,265 + BACOVA_04188 0.52 +0.3 65,266 - BACOVA_04188 0.52 +1.0 65,266 - BACOVA_04188 0.52 +1.2 65,269 + BACOVA_04188 0.52 +0.2 65,270 - BACOVA_04188 0.52 +0.2 65,285 - BACOVA_04188 0.53 -1.6 65,319 + BACOVA_04188 0.55 +0.1 65,319 + BACOVA_04188 0.55 +0.4 65,330 + BACOVA_04188 0.56 +0.7 65,396 - BACOVA_04188 0.60 +0.2
Or see this region's nucleotide sequence