Experiment: Galactomannan from guar 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02983 and BACOVA_02984 are separated by 226 nucleotides BACOVA_02984 and BACOVA_02985 are separated by 101 nucleotides BACOVA_02985 and BACOVA_02986 are separated by 101 nucleotides
BACOVA_02983: BACOVA_02983 - ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein, at 62,081 to 63,529
_02983
BACOVA_02984: BACOVA_02984 - GMP synthase (glutamine-hydrolyzing) domain protein, at 63,756 to 65,063
_02984
BACOVA_02985: BACOVA_02985 - hypothetical protein, at 65,165 to 65,356
_02985
BACOVA_02986: BACOVA_02986 - site-specific recombinase, phage integrase family, at 65,458 to 66,675
_02986
Position (kb) 63
64
65
66 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 62.756 kb on + strand, within BACOVA_02983 at 62.756 kb on + strand, within BACOVA_02983 at 62.820 kb on + strand, within BACOVA_02983 at 62.830 kb on + strand, within BACOVA_02983 at 62.830 kb on + strand, within BACOVA_02983 at 62.830 kb on + strand, within BACOVA_02983 at 62.831 kb on - strand, within BACOVA_02983 at 62.831 kb on - strand, within BACOVA_02983 at 62.831 kb on - strand, within BACOVA_02983 at 62.831 kb on - strand, within BACOVA_02983 at 62.831 kb on - strand, within BACOVA_02983 at 62.833 kb on - strand, within BACOVA_02983 at 62.935 kb on - strand, within BACOVA_02983 at 62.996 kb on - strand, within BACOVA_02983 at 63.004 kb on + strand, within BACOVA_02983 at 63.043 kb on + strand, within BACOVA_02983 at 63.055 kb on - strand, within BACOVA_02983 at 63.122 kb on - strand, within BACOVA_02983 at 63.127 kb on + strand, within BACOVA_02983 at 63.154 kb on + strand, within BACOVA_02983 at 63.155 kb on - strand, within BACOVA_02983 at 63.240 kb on + strand, within BACOVA_02983 at 63.255 kb on + strand, within BACOVA_02983 at 63.261 kb on - strand, within BACOVA_02983 at 63.323 kb on + strand, within BACOVA_02983 at 63.359 kb on + strand, within BACOVA_02983 at 63.370 kb on + strand, within BACOVA_02983 at 63.430 kb on - strand at 63.433 kb on + strand at 63.433 kb on + strand at 63.433 kb on + strand at 63.433 kb on + strand at 63.466 kb on + strand at 63.478 kb on - strand at 63.484 kb on + strand at 63.544 kb on + strand at 63.544 kb on + strand at 63.545 kb on - strand at 63.581 kb on + strand at 63.581 kb on + strand at 63.581 kb on + strand at 63.582 kb on - strand at 63.609 kb on + strand at 63.612 kb on - strand at 63.663 kb on + strand at 63.666 kb on - strand at 63.687 kb on - strand at 63.711 kb on + strand at 63.712 kb on - strand at 63.718 kb on + strand at 63.719 kb on - strand at 63.722 kb on - strand at 63.727 kb on + strand at 63.732 kb on + strand at 63.732 kb on + strand at 63.732 kb on + strand at 63.792 kb on - strand at 63.803 kb on + strand at 63.803 kb on + strand at 63.804 kb on - strand at 63.833 kb on - strand at 63.841 kb on - strand at 63.843 kb on - strand at 63.852 kb on + strand at 63.852 kb on + strand at 63.871 kb on + strand at 63.898 kb on + strand, within BACOVA_02984 at 63.908 kb on + strand, within BACOVA_02984 at 63.909 kb on - strand, within BACOVA_02984 at 63.929 kb on + strand, within BACOVA_02984 at 63.935 kb on - strand, within BACOVA_02984 at 63.935 kb on - strand, within BACOVA_02984 at 63.951 kb on - strand, within BACOVA_02984 at 63.958 kb on + strand, within BACOVA_02984 at 63.969 kb on - strand, within BACOVA_02984 at 63.969 kb on - strand, within BACOVA_02984 at 63.972 kb on + strand, within BACOVA_02984 at 63.975 kb on - strand, within BACOVA_02984 at 63.975 kb on - strand, within BACOVA_02984 at 64.010 kb on + strand, within BACOVA_02984 at 64.010 kb on + strand, within BACOVA_02984 at 64.011 kb on - strand, within BACOVA_02984 at 64.061 kb on + strand, within BACOVA_02984 at 64.064 kb on - strand, within BACOVA_02984 at 64.100 kb on + strand, within BACOVA_02984 at 64.101 kb on - strand, within BACOVA_02984 at 64.211 kb on + strand, within BACOVA_02984 at 64.212 kb on - strand, within BACOVA_02984 at 64.212 kb on - strand, within BACOVA_02984 at 64.261 kb on + strand, within BACOVA_02984 at 64.267 kb on + strand, within BACOVA_02984 at 64.267 kb on + strand, within BACOVA_02984 at 64.268 kb on - strand, within BACOVA_02984 at 64.268 kb on - strand, within BACOVA_02984 at 64.275 kb on - strand, within BACOVA_02984 at 64.275 kb on - strand, within BACOVA_02984 at 64.357 kb on + strand, within BACOVA_02984 at 64.358 kb on - strand, within BACOVA_02984 at 64.358 kb on - strand, within BACOVA_02984 at 64.363 kb on + strand, within BACOVA_02984 at 64.382 kb on + strand, within BACOVA_02984 at 64.396 kb on + strand, within BACOVA_02984 at 64.499 kb on + strand, within BACOVA_02984 at 64.502 kb on + strand, within BACOVA_02984 at 64.503 kb on - strand, within BACOVA_02984 at 64.503 kb on - strand, within BACOVA_02984 at 64.503 kb on - strand, within BACOVA_02984 at 64.514 kb on + strand, within BACOVA_02984 at 64.541 kb on + strand, within BACOVA_02984 at 64.562 kb on + strand, within BACOVA_02984 at 64.562 kb on + strand, within BACOVA_02984 at 64.563 kb on - strand, within BACOVA_02984 at 64.563 kb on - strand, within BACOVA_02984 at 64.567 kb on + strand, within BACOVA_02984 at 64.567 kb on + strand, within BACOVA_02984 at 64.568 kb on - strand, within BACOVA_02984 at 64.568 kb on - strand, within BACOVA_02984 at 64.589 kb on - strand, within BACOVA_02984 at 64.603 kb on + strand, within BACOVA_02984 at 64.625 kb on + strand, within BACOVA_02984 at 64.657 kb on + strand, within BACOVA_02984 at 64.664 kb on - strand, within BACOVA_02984 at 64.664 kb on - strand, within BACOVA_02984 at 64.714 kb on + strand, within BACOVA_02984 at 64.715 kb on - strand, within BACOVA_02984 at 64.724 kb on - strand, within BACOVA_02984 at 64.724 kb on - strand, within BACOVA_02984 at 64.731 kb on - strand, within BACOVA_02984 at 64.731 kb on - strand, within BACOVA_02984 at 64.731 kb on - strand, within BACOVA_02984 at 64.733 kb on + strand, within BACOVA_02984 at 64.733 kb on + strand, within BACOVA_02984 at 64.808 kb on + strand, within BACOVA_02984 at 64.824 kb on + strand, within BACOVA_02984 at 64.834 kb on + strand, within BACOVA_02984 at 64.925 kb on + strand, within BACOVA_02984 at 64.925 kb on + strand, within BACOVA_02984 at 64.937 kb on + strand at 64.937 kb on + strand at 64.959 kb on - strand at 64.973 kb on - strand at 64.983 kb on - strand at 64.983 kb on - strand at 65.006 kb on - strand at 65.006 kb on - strand at 65.020 kb on - strand at 65.040 kb on - strand at 65.050 kb on + strand at 65.116 kb on + strand at 65.123 kb on - strand at 65.172 kb on + strand at 65.187 kb on + strand, within BACOVA_02985 at 65.293 kb on + strand, within BACOVA_02985 at 65.294 kb on - strand, within BACOVA_02985 at 65.294 kb on - strand, within BACOVA_02985 at 65.296 kb on - strand, within BACOVA_02985 at 65.402 kb on + strand at 65.403 kb on - strand at 65.403 kb on - strand at 65.405 kb on + strand at 65.409 kb on + strand at 65.410 kb on - strand at 65.421 kb on + strand at 65.447 kb on - strand at 65.447 kb on - strand at 65.450 kb on + strand at 65.451 kb on - strand at 65.452 kb on + strand at 65.478 kb on - strand at 65.478 kb on - strand at 65.491 kb on - strand at 65.494 kb on + strand at 65.494 kb on + strand at 65.494 kb on + strand at 65.494 kb on + strand at 65.494 kb on + strand at 65.495 kb on - strand at 65.496 kb on + strand at 65.496 kb on + strand at 65.496 kb on + strand at 65.497 kb on - strand at 65.497 kb on - strand at 65.501 kb on + strand at 65.543 kb on + strand at 65.590 kb on + strand, within BACOVA_02986 at 65.592 kb on + strand, within BACOVA_02986 at 65.592 kb on + strand, within BACOVA_02986 at 65.593 kb on - strand, within BACOVA_02986 at 65.593 kb on - strand, within BACOVA_02986 at 65.593 kb on - strand, within BACOVA_02986 at 65.594 kb on + strand, within BACOVA_02986 at 65.594 kb on + strand, within BACOVA_02986 at 65.595 kb on - strand, within BACOVA_02986 at 65.595 kb on - strand, within BACOVA_02986 at 65.601 kb on - strand, within BACOVA_02986 at 65.602 kb on + strand, within BACOVA_02986 at 65.602 kb on + strand, within BACOVA_02986 at 65.603 kb on - strand, within BACOVA_02986 at 65.658 kb on - strand, within BACOVA_02986 at 65.835 kb on + strand, within BACOVA_02986 at 65.836 kb on - strand, within BACOVA_02986 at 65.846 kb on - strand, within BACOVA_02986 at 65.879 kb on + strand, within BACOVA_02986 at 65.880 kb on - strand, within BACOVA_02986 at 65.880 kb on - strand, within BACOVA_02986 at 65.923 kb on + strand, within BACOVA_02986 at 65.923 kb on + strand, within BACOVA_02986 at 65.925 kb on + strand, within BACOVA_02986 at 65.925 kb on + strand, within BACOVA_02986 at 65.926 kb on - strand, within BACOVA_02986 at 65.928 kb on + strand, within BACOVA_02986 at 65.928 kb on + strand, within BACOVA_02986 at 65.928 kb on + strand, within BACOVA_02986 at 65.933 kb on - strand, within BACOVA_02986 at 65.933 kb on - strand, within BACOVA_02986 at 65.937 kb on + strand, within BACOVA_02986 at 65.938 kb on - strand, within BACOVA_02986 at 65.994 kb on + strand, within BACOVA_02986 at 66.017 kb on + strand, within BACOVA_02986 at 66.022 kb on + strand, within BACOVA_02986 at 66.022 kb on + strand, within BACOVA_02986 at 66.023 kb on - strand, within BACOVA_02986 at 66.023 kb on - strand, within BACOVA_02986 at 66.025 kb on + strand, within BACOVA_02986 at 66.059 kb on + strand, within BACOVA_02986
Per-strain Table
Position Strand Gene LocusTag Fraction Galactomannan from guar 2.5 mg/mL (C) remove 62,756 + BACOVA_02983 0.47 +0.5 62,756 + BACOVA_02983 0.47 +0.2 62,820 + BACOVA_02983 0.51 +0.1 62,830 + BACOVA_02983 0.52 +1.5 62,830 + BACOVA_02983 0.52 -2.0 62,830 + BACOVA_02983 0.52 +1.0 62,831 - BACOVA_02983 0.52 +0.3 62,831 - BACOVA_02983 0.52 -1.4 62,831 - BACOVA_02983 0.52 -0.9 62,831 - BACOVA_02983 0.52 +0.5 62,831 - BACOVA_02983 0.52 -0.0 62,833 - BACOVA_02983 0.52 +1.1 62,935 - BACOVA_02983 0.59 -2.0 62,996 - BACOVA_02983 0.63 -0.6 63,004 + BACOVA_02983 0.64 -0.7 63,043 + BACOVA_02983 0.66 +0.5 63,055 - BACOVA_02983 0.67 +0.1 63,122 - BACOVA_02983 0.72 +0.5 63,127 + BACOVA_02983 0.72 -1.2 63,154 + BACOVA_02983 0.74 +1.1 63,155 - BACOVA_02983 0.74 +0.5 63,240 + BACOVA_02983 0.80 -0.3 63,255 + BACOVA_02983 0.81 -1.1 63,261 - BACOVA_02983 0.81 -0.4 63,323 + BACOVA_02983 0.86 -1.1 63,359 + BACOVA_02983 0.88 +0.4 63,370 + BACOVA_02983 0.89 +0.4 63,430 - -0.0 63,433 + +0.6 63,433 + +1.0 63,433 + -0.4 63,433 + +0.7 63,466 + +0.3 63,478 - -0.5 63,484 + -0.5 63,544 + +1.1 63,544 + +0.4 63,545 - -1.5 63,581 + -0.7 63,581 + +0.3 63,581 + -0.2 63,582 - -0.6 63,609 + -0.4 63,612 - -0.3 63,663 + +0.0 63,666 - -2.0 63,687 - -2.2 63,711 + -0.6 63,712 - +0.5 63,718 + +0.5 63,719 - -2.6 63,722 - -2.1 63,727 + +0.1 63,732 + -0.4 63,732 + +1.1 63,732 + -0.3 63,792 - -0.9 63,803 + +0.2 63,803 + +0.5 63,804 - +0.7 63,833 - -0.5 63,841 - -1.2 63,843 - +0.5 63,852 + -0.3 63,852 + +2.0 63,871 + +0.2 63,898 + BACOVA_02984 0.11 +0.9 63,908 + BACOVA_02984 0.12 -1.6 63,909 - BACOVA_02984 0.12 +0.7 63,929 + BACOVA_02984 0.13 +0.0 63,935 - BACOVA_02984 0.14 -0.1 63,935 - BACOVA_02984 0.14 +1.7 63,951 - BACOVA_02984 0.15 +0.8 63,958 + BACOVA_02984 0.15 -1.5 63,969 - BACOVA_02984 0.16 -0.3 63,969 - BACOVA_02984 0.16 +0.1 63,972 + BACOVA_02984 0.17 +1.2 63,975 - BACOVA_02984 0.17 +0.2 63,975 - BACOVA_02984 0.17 -0.7 64,010 + BACOVA_02984 0.19 -0.3 64,010 + BACOVA_02984 0.19 -1.9 64,011 - BACOVA_02984 0.19 -1.3 64,061 + BACOVA_02984 0.23 +0.3 64,064 - BACOVA_02984 0.24 -2.4 64,100 + BACOVA_02984 0.26 -0.3 64,101 - BACOVA_02984 0.26 -0.0 64,211 + BACOVA_02984 0.35 +0.8 64,212 - BACOVA_02984 0.35 -0.9 64,212 - BACOVA_02984 0.35 -0.9 64,261 + BACOVA_02984 0.39 -0.1 64,267 + BACOVA_02984 0.39 +0.8 64,267 + BACOVA_02984 0.39 -0.3 64,268 - BACOVA_02984 0.39 +0.5 64,268 - BACOVA_02984 0.39 +1.1 64,275 - BACOVA_02984 0.40 -1.0 64,275 - BACOVA_02984 0.40 +0.9 64,357 + BACOVA_02984 0.46 -0.7 64,358 - BACOVA_02984 0.46 +0.3 64,358 - BACOVA_02984 0.46 +0.2 64,363 + BACOVA_02984 0.46 +0.3 64,382 + BACOVA_02984 0.48 -0.3 64,396 + BACOVA_02984 0.49 +0.0 64,499 + BACOVA_02984 0.57 +0.1 64,502 + BACOVA_02984 0.57 +0.1 64,503 - BACOVA_02984 0.57 +2.1 64,503 - BACOVA_02984 0.57 +0.4 64,503 - BACOVA_02984 0.57 -0.9 64,514 + BACOVA_02984 0.58 -0.7 64,541 + BACOVA_02984 0.60 +0.1 64,562 + BACOVA_02984 0.62 +0.3 64,562 + BACOVA_02984 0.62 +0.3 64,563 - BACOVA_02984 0.62 -0.9 64,563 - BACOVA_02984 0.62 +0.2 64,567 + BACOVA_02984 0.62 +0.8 64,567 + BACOVA_02984 0.62 -0.7 64,568 - BACOVA_02984 0.62 -0.3 64,568 - BACOVA_02984 0.62 +0.9 64,589 - BACOVA_02984 0.64 +1.1 64,603 + BACOVA_02984 0.65 -0.7 64,625 + BACOVA_02984 0.66 -0.1 64,657 + BACOVA_02984 0.69 +1.1 64,664 - BACOVA_02984 0.69 -0.6 64,664 - BACOVA_02984 0.69 +0.6 64,714 + BACOVA_02984 0.73 -0.7 64,715 - BACOVA_02984 0.73 -0.5 64,724 - BACOVA_02984 0.74 -0.4 64,724 - BACOVA_02984 0.74 -0.1 64,731 - BACOVA_02984 0.75 -0.1 64,731 - BACOVA_02984 0.75 -1.7 64,731 - BACOVA_02984 0.75 +0.9 64,733 + BACOVA_02984 0.75 -0.6 64,733 + BACOVA_02984 0.75 -0.1 64,808 + BACOVA_02984 0.80 +0.6 64,824 + BACOVA_02984 0.82 -1.1 64,834 + BACOVA_02984 0.82 +0.5 64,925 + BACOVA_02984 0.89 -0.3 64,925 + BACOVA_02984 0.89 -1.0 64,937 + -0.4 64,937 + -0.5 64,959 - -0.4 64,973 - +0.6 64,983 - +0.5 64,983 - +0.7 65,006 - +1.0 65,006 - +0.4 65,020 - -0.4 65,040 - +1.1 65,050 + +0.2 65,116 + +0.2 65,123 - -1.4 65,172 + -0.8 65,187 + BACOVA_02985 0.11 -0.5 65,293 + BACOVA_02985 0.67 +0.0 65,294 - BACOVA_02985 0.67 +0.8 65,294 - BACOVA_02985 0.67 +0.3 65,296 - BACOVA_02985 0.68 -0.8 65,402 + -0.9 65,403 - -0.1 65,403 - +1.1 65,405 + -0.9 65,409 + +1.3 65,410 - +0.3 65,421 + +0.5 65,447 - -1.4 65,447 - +1.0 65,450 + -1.4 65,451 - +0.3 65,452 + +0.6 65,478 - +0.5 65,478 - +0.1 65,491 - +0.8 65,494 + -0.6 65,494 + +1.8 65,494 + +1.1 65,494 + -0.7 65,494 + +0.7 65,495 - -0.2 65,496 + +2.3 65,496 + +0.4 65,496 + +0.1 65,497 - -1.4 65,497 - -2.0 65,501 + -2.8 65,543 + -1.5 65,590 + BACOVA_02986 0.11 +0.1 65,592 + BACOVA_02986 0.11 -0.4 65,592 + BACOVA_02986 0.11 -0.4 65,593 - BACOVA_02986 0.11 -0.2 65,593 - BACOVA_02986 0.11 -0.0 65,593 - BACOVA_02986 0.11 +1.0 65,594 + BACOVA_02986 0.11 -0.7 65,594 + BACOVA_02986 0.11 -0.7 65,595 - BACOVA_02986 0.11 +0.9 65,595 - BACOVA_02986 0.11 +1.4 65,601 - BACOVA_02986 0.12 -0.7 65,602 + BACOVA_02986 0.12 +0.8 65,602 + BACOVA_02986 0.12 +0.8 65,603 - BACOVA_02986 0.12 +0.8 65,658 - BACOVA_02986 0.16 -2.7 65,835 + BACOVA_02986 0.31 +0.5 65,836 - BACOVA_02986 0.31 -0.3 65,846 - BACOVA_02986 0.32 -1.5 65,879 + BACOVA_02986 0.35 -1.4 65,880 - BACOVA_02986 0.35 -1.3 65,880 - BACOVA_02986 0.35 +1.8 65,923 + BACOVA_02986 0.38 +0.2 65,923 + BACOVA_02986 0.38 +0.4 65,925 + BACOVA_02986 0.38 -0.7 65,925 + BACOVA_02986 0.38 +0.2 65,926 - BACOVA_02986 0.38 -1.8 65,928 + BACOVA_02986 0.39 -0.7 65,928 + BACOVA_02986 0.39 +1.3 65,928 + BACOVA_02986 0.39 +1.3 65,933 - BACOVA_02986 0.39 -1.3 65,933 - BACOVA_02986 0.39 +0.7 65,937 + BACOVA_02986 0.39 -0.0 65,938 - BACOVA_02986 0.39 +0.5 65,994 + BACOVA_02986 0.44 -0.1 66,017 + BACOVA_02986 0.46 +0.3 66,022 + BACOVA_02986 0.46 +0.4 66,022 + BACOVA_02986 0.46 -0.6 66,023 - BACOVA_02986 0.46 +0.4 66,023 - BACOVA_02986 0.46 -0.1 66,025 + BACOVA_02986 0.47 -1.1 66,059 + BACOVA_02986 0.49 +0.8
Or see this region's nucleotide sequence