Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00844

Experiment: Galactomannan from guar 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00843 and BACOVA_00844 overlap by 13 nucleotidesBACOVA_00844 and BACOVA_00845 overlap by 20 nucleotidesBACOVA_00845 and BACOVA_00846 are separated by 269 nucleotides BACOVA_00843: BACOVA_00843 - hypothetical protein, at 100,433 to 102,145 _00843 BACOVA_00844: BACOVA_00844 - hypothetical protein, at 102,133 to 102,246 _00844 BACOVA_00845: BACOVA_00845 - putative DNA-binding protein, at 102,227 to 102,844 _00845 BACOVA_00846: BACOVA_00846 - hypothetical protein, at 103,114 to 105,360 _00846 Position (kb) 102 103Strain fitness (log2 ratio) -2 -1 0 1 2at 101.210 kb on - strand, within BACOVA_00843at 101.210 kb on - strand, within BACOVA_00843at 101.244 kb on + strand, within BACOVA_00843at 101.248 kb on + strand, within BACOVA_00843at 101.248 kb on + strand, within BACOVA_00843at 101.248 kb on + strand, within BACOVA_00843at 101.305 kb on - strand, within BACOVA_00843at 101.305 kb on - strand, within BACOVA_00843at 101.309 kb on - strand, within BACOVA_00843at 101.309 kb on - strand, within BACOVA_00843at 101.315 kb on + strand, within BACOVA_00843at 101.316 kb on - strand, within BACOVA_00843at 101.319 kb on - strand, within BACOVA_00843at 101.319 kb on - strand, within BACOVA_00843at 101.319 kb on - strand, within BACOVA_00843at 101.358 kb on + strand, within BACOVA_00843at 101.358 kb on + strand, within BACOVA_00843at 101.362 kb on + strand, within BACOVA_00843at 101.363 kb on - strand, within BACOVA_00843at 101.378 kb on + strand, within BACOVA_00843at 101.378 kb on + strand, within BACOVA_00843at 101.379 kb on - strand, within BACOVA_00843at 101.379 kb on - strand, within BACOVA_00843at 101.383 kb on - strand, within BACOVA_00843at 101.416 kb on + strand, within BACOVA_00843at 101.416 kb on + strand, within BACOVA_00843at 101.417 kb on - strand, within BACOVA_00843at 101.444 kb on + strand, within BACOVA_00843at 101.455 kb on + strand, within BACOVA_00843at 101.456 kb on - strand, within BACOVA_00843at 101.458 kb on + strand, within BACOVA_00843at 101.458 kb on + strand, within BACOVA_00843at 101.459 kb on - strand, within BACOVA_00843at 101.459 kb on - strand, within BACOVA_00843at 101.461 kb on - strand, within BACOVA_00843at 101.461 kb on - strand, within BACOVA_00843at 101.468 kb on - strand, within BACOVA_00843at 101.476 kb on - strand, within BACOVA_00843at 101.516 kb on - strand, within BACOVA_00843at 101.525 kb on - strand, within BACOVA_00843at 101.550 kb on - strand, within BACOVA_00843at 101.563 kb on + strand, within BACOVA_00843at 101.587 kb on + strand, within BACOVA_00843at 101.599 kb on - strand, within BACOVA_00843at 101.613 kb on + strand, within BACOVA_00843at 101.641 kb on + strand, within BACOVA_00843at 101.662 kb on + strand, within BACOVA_00843at 101.662 kb on + strand, within BACOVA_00843at 101.695 kb on - strand, within BACOVA_00843at 101.695 kb on - strand, within BACOVA_00843at 101.699 kb on - strand, within BACOVA_00843at 101.720 kb on - strand, within BACOVA_00843at 101.720 kb on - strand, within BACOVA_00843at 101.771 kb on - strand, within BACOVA_00843at 101.783 kb on + strand, within BACOVA_00843at 101.783 kb on + strand, within BACOVA_00843at 101.783 kb on + strand, within BACOVA_00843at 101.784 kb on - strand, within BACOVA_00843at 101.836 kb on + strand, within BACOVA_00843at 101.837 kb on - strand, within BACOVA_00843at 101.881 kb on + strand, within BACOVA_00843at 101.882 kb on - strand, within BACOVA_00843at 101.882 kb on - strand, within BACOVA_00843at 101.967 kb on + strand, within BACOVA_00843at 101.968 kb on - strand, within BACOVA_00843at 101.970 kb on + strand, within BACOVA_00843at 101.970 kb on + strand, within BACOVA_00843at 101.984 kb on - strandat 102.037 kb on + strandat 102.038 kb on - strandat 102.053 kb on - strandat 102.053 kb on - strandat 102.057 kb on - strandat 102.058 kb on + strandat 102.058 kb on + strandat 102.058 kb on + strandat 102.058 kb on + strandat 102.060 kb on + strandat 102.060 kb on + strandat 102.061 kb on - strandat 102.061 kb on - strandat 102.070 kb on + strandat 102.070 kb on + strandat 102.071 kb on - strandat 102.075 kb on - strandat 102.134 kb on + strandat 102.136 kb on + strandat 102.136 kb on + strandat 102.136 kb on + strandat 102.136 kb on + strandat 102.137 kb on - strandat 102.137 kb on - strandat 102.137 kb on - strandat 102.151 kb on + strand, within BACOVA_00844at 102.152 kb on - strand, within BACOVA_00844at 102.163 kb on + strand, within BACOVA_00844at 102.225 kb on + strand, within BACOVA_00844at 102.225 kb on + strand, within BACOVA_00844at 102.226 kb on - strand, within BACOVA_00844at 102.228 kb on + strandat 102.228 kb on + strandat 102.228 kb on + strandat 102.229 kb on - strandat 102.229 kb on - strandat 102.229 kb on - strandat 102.247 kb on - strandat 102.302 kb on - strand, within BACOVA_00845at 102.346 kb on + strand, within BACOVA_00845at 102.347 kb on - strand, within BACOVA_00845at 102.349 kb on + strand, within BACOVA_00845at 102.352 kb on - strand, within BACOVA_00845at 102.352 kb on - strand, within BACOVA_00845at 102.352 kb on - strand, within BACOVA_00845at 102.368 kb on - strand, within BACOVA_00845at 102.395 kb on + strand, within BACOVA_00845at 102.473 kb on + strand, within BACOVA_00845at 102.474 kb on - strand, within BACOVA_00845at 102.570 kb on - strand, within BACOVA_00845at 102.581 kb on - strand, within BACOVA_00845at 102.598 kb on + strand, within BACOVA_00845at 102.629 kb on - strand, within BACOVA_00845at 102.665 kb on + strand, within BACOVA_00845at 102.666 kb on - strand, within BACOVA_00845at 102.696 kb on + strand, within BACOVA_00845at 102.823 kb on - strandat 102.823 kb on - strandat 102.844 kb on + strandat 102.845 kb on - strandat 102.845 kb on - strandat 102.849 kb on - strandat 102.850 kb on + strandat 102.851 kb on - strandat 102.861 kb on + strandat 102.861 kb on + strandat 102.862 kb on - strandat 102.874 kb on + strandat 102.875 kb on - strandat 102.875 kb on - strandat 102.887 kb on - strandat 102.893 kb on - strandat 102.896 kb on + strandat 103.033 kb on - strandat 103.033 kb on - strandat 103.045 kb on - strandat 103.054 kb on + strandat 103.060 kb on + strandat 103.130 kb on - strandat 103.134 kb on + strandat 103.135 kb on - strandat 103.170 kb on + strandat 103.171 kb on - strandat 103.171 kb on - strandat 103.172 kb on + strandat 103.172 kb on + strandat 103.172 kb on + strandat 103.172 kb on + strandat 103.173 kb on - strandat 103.174 kb on + strandat 103.174 kb on + strandat 103.175 kb on - strandat 103.175 kb on - strandat 103.194 kb on + strandat 103.235 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Galactomannan from guar 2.5 mg/mL (C)
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101,210 - BACOVA_00843 0.45 -0.8
101,210 - BACOVA_00843 0.45 -0.3
101,244 + BACOVA_00843 0.47 +0.7
101,248 + BACOVA_00843 0.48 -0.6
101,248 + BACOVA_00843 0.48 -0.3
101,248 + BACOVA_00843 0.48 +0.6
101,305 - BACOVA_00843 0.51 -2.0
101,305 - BACOVA_00843 0.51 -0.6
101,309 - BACOVA_00843 0.51 +2.0
101,309 - BACOVA_00843 0.51 +0.8
101,315 + BACOVA_00843 0.51 +0.5
101,316 - BACOVA_00843 0.52 -0.0
101,319 - BACOVA_00843 0.52 +0.5
101,319 - BACOVA_00843 0.52 -0.6
101,319 - BACOVA_00843 0.52 -0.6
101,358 + BACOVA_00843 0.54 +0.7
101,358 + BACOVA_00843 0.54 +0.7
101,362 + BACOVA_00843 0.54 -0.1
101,363 - BACOVA_00843 0.54 +0.2
101,378 + BACOVA_00843 0.55 -0.5
101,378 + BACOVA_00843 0.55 -0.4
101,379 - BACOVA_00843 0.55 -0.3
101,379 - BACOVA_00843 0.55 +0.7
101,383 - BACOVA_00843 0.55 +0.5
101,416 + BACOVA_00843 0.57 +1.5
101,416 + BACOVA_00843 0.57 +0.4
101,417 - BACOVA_00843 0.57 -0.2
101,444 + BACOVA_00843 0.59 -0.5
101,455 + BACOVA_00843 0.60 -0.6
101,456 - BACOVA_00843 0.60 +0.8
101,458 + BACOVA_00843 0.60 +2.0
101,458 + BACOVA_00843 0.60 +0.5
101,459 - BACOVA_00843 0.60 +0.5
101,459 - BACOVA_00843 0.60 +0.3
101,461 - BACOVA_00843 0.60 -0.0
101,461 - BACOVA_00843 0.60 +1.0
101,468 - BACOVA_00843 0.60 -0.4
101,476 - BACOVA_00843 0.61 +0.5
101,516 - BACOVA_00843 0.63 +0.6
101,525 - BACOVA_00843 0.64 +0.3
101,550 - BACOVA_00843 0.65 +0.3
101,563 + BACOVA_00843 0.66 -1.3
101,587 + BACOVA_00843 0.67 +0.4
101,599 - BACOVA_00843 0.68 +0.7
101,613 + BACOVA_00843 0.69 +0.8
101,641 + BACOVA_00843 0.71 +0.4
101,662 + BACOVA_00843 0.72 +0.3
101,662 + BACOVA_00843 0.72 +1.0
101,695 - BACOVA_00843 0.74 -0.7
101,695 - BACOVA_00843 0.74 -1.1
101,699 - BACOVA_00843 0.74 -0.5
101,720 - BACOVA_00843 0.75 -0.7
101,720 - BACOVA_00843 0.75 +1.0
101,771 - BACOVA_00843 0.78 -0.5
101,783 + BACOVA_00843 0.79 +2.4
101,783 + BACOVA_00843 0.79 -1.2
101,783 + BACOVA_00843 0.79 +0.5
101,784 - BACOVA_00843 0.79 -1.1
101,836 + BACOVA_00843 0.82 -0.0
101,837 - BACOVA_00843 0.82 +0.9
101,881 + BACOVA_00843 0.85 -1.0
101,882 - BACOVA_00843 0.85 -1.4
101,882 - BACOVA_00843 0.85 +1.7
101,967 + BACOVA_00843 0.90 -0.9
101,968 - BACOVA_00843 0.90 +0.1
101,970 + BACOVA_00843 0.90 +0.9
101,970 + BACOVA_00843 0.90 -0.8
101,984 - +0.1
102,037 + -1.7
102,038 - +1.1
102,053 - -1.1
102,053 - +0.6
102,057 - -0.7
102,058 + -0.7
102,058 + -0.4
102,058 + -0.4
102,058 + -1.3
102,060 + +1.2
102,060 + +0.0
102,061 - -2.6
102,061 - -0.1
102,070 + +0.3
102,070 + -0.8
102,071 - -0.2
102,075 - -0.9
102,134 + +1.2
102,136 + +0.0
102,136 + +0.6
102,136 + +0.3
102,136 + -0.6
102,137 - +1.2
102,137 - -0.1
102,137 - -1.6
102,151 + BACOVA_00844 0.16 +0.5
102,152 - BACOVA_00844 0.17 +1.1
102,163 + BACOVA_00844 0.26 -0.0
102,225 + BACOVA_00844 0.81 +0.7
102,225 + BACOVA_00844 0.81 +0.8
102,226 - BACOVA_00844 0.82 -1.7
102,228 + +0.2
102,228 + -0.8
102,228 + -0.5
102,229 - +0.1
102,229 - -0.3
102,229 - -2.5
102,247 - -0.3
102,302 - BACOVA_00845 0.12 -2.0
102,346 + BACOVA_00845 0.19 -0.1
102,347 - BACOVA_00845 0.19 +0.0
102,349 + BACOVA_00845 0.20 +0.1
102,352 - BACOVA_00845 0.20 +0.6
102,352 - BACOVA_00845 0.20 +0.9
102,352 - BACOVA_00845 0.20 -0.5
102,368 - BACOVA_00845 0.23 +0.4
102,395 + BACOVA_00845 0.27 +1.5
102,473 + BACOVA_00845 0.40 +0.3
102,474 - BACOVA_00845 0.40 -1.3
102,570 - BACOVA_00845 0.56 +0.3
102,581 - BACOVA_00845 0.57 -0.2
102,598 + BACOVA_00845 0.60 -0.4
102,629 - BACOVA_00845 0.65 -0.9
102,665 + BACOVA_00845 0.71 -0.1
102,666 - BACOVA_00845 0.71 +0.5
102,696 + BACOVA_00845 0.76 +0.2
102,823 - +0.4
102,823 - -0.9
102,844 + +0.4
102,845 - -0.0
102,845 - -0.1
102,849 - +1.2
102,850 + +0.5
102,851 - +0.5
102,861 + +0.2
102,861 + +1.6
102,862 - +0.6
102,874 + +0.6
102,875 - +1.5
102,875 - -1.1
102,887 - +0.2
102,893 - +2.0
102,896 + -1.3
103,033 - -0.3
103,033 - -2.4
103,045 - +0.0
103,054 + +0.2
103,060 + -0.3
103,130 - +1.2
103,134 + +0.5
103,135 - +0.2
103,170 + +0.7
103,171 - +0.9
103,171 - +1.0
103,172 + +0.6
103,172 + +2.4
103,172 + +1.0
103,172 + +1.3
103,173 - +0.0
103,174 + -0.7
103,174 + +0.8
103,175 - +1.1
103,175 - -1.2
103,194 + +0.1
103,235 - -0.4

Or see this region's nucleotide sequence