Experiment: Ying_sugar7 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF898 and GFF899 overlap by 4 nucleotides GFF899 and GFF900 are separated by 13 nucleotides GFF900 and GFF901 are separated by 27 nucleotides GFF901 and GFF902 are separated by 29 nucleotides
GFF898 - Acetyl-CoA acetyltransferase, at 627,189 to 628,370
GFF898
GFF899 - hypothetical protein, at 628,367 to 628,819
GFF899
GFF900 - Acetyl-CoA synthetase (ADP-forming) alpha and beta chains, putative, at 628,833 to 630,974
GFF900
GFF901 - contains maoC-like domain, at 631,002 to 631,454
GFF901
GFF902 - Butyryl-CoA dehydrogenase (EC 1.3.8.1), at 631,484 to 632,656
GFF902
Position (kb) 628
629
630
631 Strain fitness (log2 ratio) -2
-1
0
1
2 at 627.946 kb on + strand, within GFF898 at 627.947 kb on - strand, within GFF898 at 628.008 kb on + strand, within GFF898 at 628.008 kb on + strand, within GFF898 at 628.056 kb on + strand, within GFF898 at 628.056 kb on + strand, within GFF898 at 628.056 kb on + strand, within GFF898 at 628.057 kb on - strand, within GFF898 at 628.057 kb on - strand, within GFF898 at 628.057 kb on - strand, within GFF898 at 628.057 kb on - strand, within GFF898 at 628.057 kb on - strand, within GFF898 at 628.057 kb on - strand, within GFF898 at 628.230 kb on + strand, within GFF898 at 628.231 kb on - strand, within GFF898 at 628.237 kb on - strand, within GFF898 at 628.329 kb on + strand at 628.329 kb on + strand at 628.329 kb on + strand at 628.330 kb on - strand at 628.330 kb on - strand at 628.427 kb on + strand, within GFF899 at 628.605 kb on - strand, within GFF899 at 628.658 kb on + strand, within GFF899 at 628.658 kb on + strand, within GFF899 at 628.805 kb on - strand at 628.969 kb on - strand at 628.987 kb on + strand at 628.990 kb on + strand at 628.991 kb on - strand at 629.307 kb on + strand, within GFF900 at 629.307 kb on + strand, within GFF900 at 629.407 kb on - strand, within GFF900 at 629.466 kb on + strand, within GFF900 at 629.467 kb on - strand, within GFF900 at 629.586 kb on + strand, within GFF900 at 629.587 kb on - strand, within GFF900 at 630.147 kb on + strand, within GFF900 at 630.147 kb on + strand, within GFF900 at 630.147 kb on + strand, within GFF900 at 630.147 kb on + strand, within GFF900 at 630.147 kb on + strand, within GFF900 at 630.147 kb on + strand, within GFF900 at 630.147 kb on + strand, within GFF900 at 630.148 kb on - strand, within GFF900 at 630.148 kb on - strand, within GFF900 at 630.360 kb on + strand, within GFF900 at 630.360 kb on + strand, within GFF900 at 630.453 kb on + strand, within GFF900 at 630.526 kb on + strand, within GFF900 at 630.783 kb on + strand at 630.972 kb on + strand at 630.973 kb on - strand at 630.993 kb on - strand at 631.143 kb on + strand, within GFF901 at 631.144 kb on - strand, within GFF901 at 631.144 kb on - strand, within GFF901 at 631.466 kb on + strand at 631.467 kb on - strand at 631.628 kb on + strand, within GFF902 at 631.629 kb on - strand, within GFF902 at 631.736 kb on + strand, within GFF902 at 631.736 kb on + strand, within GFF902 at 631.736 kb on + strand, within GFF902 at 631.737 kb on - strand, within GFF902 at 631.737 kb on - strand, within GFF902 at 631.737 kb on - strand, within GFF902 at 631.737 kb on - strand, within GFF902 at 631.742 kb on + strand, within GFF902 at 631.970 kb on + strand, within GFF902 at 631.970 kb on + strand, within GFF902
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 1 remove 627,946 + GFF898 0.64 +0.9 627,947 - GFF898 0.64 -1.2 628,008 + GFF898 0.69 +0.2 628,008 + GFF898 0.69 -0.2 628,056 + GFF898 0.73 -0.1 628,056 + GFF898 0.73 -0.2 628,056 + GFF898 0.73 -0.6 628,057 - GFF898 0.73 +0.3 628,057 - GFF898 0.73 +0.3 628,057 - GFF898 0.73 -0.9 628,057 - GFF898 0.73 +2.1 628,057 - GFF898 0.73 +0.7 628,057 - GFF898 0.73 +0.5 628,230 + GFF898 0.88 +1.0 628,231 - GFF898 0.88 +0.6 628,237 - GFF898 0.89 -0.1 628,329 + -0.0 628,329 + +0.1 628,329 + +0.4 628,330 - +0.3 628,330 - +0.6 628,427 + GFF899 0.13 +0.4 628,605 - GFF899 0.53 +0.5 628,658 + GFF899 0.64 -0.3 628,658 + GFF899 0.64 -0.4 628,805 - +0.1 628,969 - -0.4 628,987 + -0.0 628,990 + -0.3 628,991 - +0.4 629,307 + GFF900 0.22 -0.8 629,307 + GFF900 0.22 -2.2 629,407 - GFF900 0.27 +0.0 629,466 + GFF900 0.30 +0.3 629,467 - GFF900 0.30 +0.5 629,586 + GFF900 0.35 -0.2 629,587 - GFF900 0.35 -0.5 630,147 + GFF900 0.61 +0.4 630,147 + GFF900 0.61 -0.4 630,147 + GFF900 0.61 +1.1 630,147 + GFF900 0.61 +1.2 630,147 + GFF900 0.61 -0.3 630,147 + GFF900 0.61 -1.0 630,147 + GFF900 0.61 -0.0 630,148 - GFF900 0.61 +1.3 630,148 - GFF900 0.61 -1.2 630,360 + GFF900 0.71 -0.1 630,360 + GFF900 0.71 -0.2 630,453 + GFF900 0.76 -0.8 630,526 + GFF900 0.79 -1.1 630,783 + -0.4 630,972 + -0.2 630,973 - -0.9 630,993 - +0.2 631,143 + GFF901 0.31 +0.0 631,144 - GFF901 0.31 +0.1 631,144 - GFF901 0.31 +0.5 631,466 + -0.4 631,467 - +0.7 631,628 + GFF902 0.12 +0.1 631,629 - GFF902 0.12 +0.5 631,736 + GFF902 0.21 +0.3 631,736 + GFF902 0.21 -1.5 631,736 + GFF902 0.21 +0.3 631,737 - GFF902 0.22 +0.3 631,737 - GFF902 0.22 -0.0 631,737 - GFF902 0.22 -1.9 631,737 - GFF902 0.22 -0.1 631,742 + GFF902 0.22 +0.4 631,970 + GFF902 0.41 +0.2 631,970 + GFF902 0.41 -0.7
Or see this region's nucleotide sequence