Experiment: Ying_sugar7 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF713 and GFF714 are separated by 69 nucleotides GFF714 and GFF715 overlap by 4 nucleotides GFF715 and GFF716 are separated by 331 nucleotides
GFF713 - Valyl-tRNA synthetase (EC 6.1.1.9), at 391,767 to 394,667
GFF713
GFF714 - hypothetical protein, at 394,737 to 394,925
GFF714
GFF715 - putative oxygenase, at 394,922 to 396,655
GFF715
GFF716 - Glyoxalase family protein, at 396,987 to 397,601
GFF716
Position (kb) 394
395
396
397 Strain fitness (log2 ratio) -2
-1
0
1 at 394.738 kb on + strand at 394.738 kb on + strand at 394.739 kb on - strand at 394.739 kb on - strand at 394.742 kb on + strand at 394.785 kb on - strand, within GFF714 at 394.885 kb on + strand, within GFF714 at 395.325 kb on + strand, within GFF715 at 395.325 kb on + strand, within GFF715 at 395.326 kb on - strand, within GFF715 at 395.350 kb on - strand, within GFF715 at 395.403 kb on + strand, within GFF715 at 395.533 kb on - strand, within GFF715 at 395.721 kb on + strand, within GFF715 at 395.809 kb on - strand, within GFF715 at 396.070 kb on - strand, within GFF715 at 396.070 kb on - strand, within GFF715 at 396.201 kb on + strand, within GFF715 at 396.202 kb on - strand, within GFF715 at 396.277 kb on - strand, within GFF715 at 396.387 kb on + strand, within GFF715 at 396.387 kb on + strand, within GFF715 at 396.388 kb on - strand, within GFF715 at 396.388 kb on - strand, within GFF715 at 396.588 kb on + strand at 396.588 kb on + strand at 396.612 kb on + strand at 396.612 kb on + strand at 396.613 kb on - strand at 397.204 kb on + strand, within GFF716 at 397.204 kb on + strand, within GFF716 at 397.204 kb on + strand, within GFF716 at 397.205 kb on - strand, within GFF716 at 397.205 kb on - strand, within GFF716 at 397.205 kb on - strand, within GFF716 at 397.205 kb on - strand, within GFF716 at 397.205 kb on - strand, within GFF716 at 397.205 kb on - strand, within GFF716 at 397.426 kb on + strand, within GFF716 at 397.435 kb on + strand, within GFF716 at 397.436 kb on - strand, within GFF716 at 397.436 kb on - strand, within GFF716 at 397.456 kb on + strand, within GFF716 at 397.457 kb on - strand, within GFF716 at 397.477 kb on + strand, within GFF716 at 397.478 kb on - strand, within GFF716 at 397.505 kb on - strand, within GFF716 at 397.541 kb on - strand at 397.547 kb on - strand at 397.547 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 1 remove 394,738 + -0.3 394,738 + +0.2 394,739 - -1.5 394,739 - +0.3 394,742 + +0.4 394,785 - GFF714 0.25 +0.1 394,885 + GFF714 0.78 -1.9 395,325 + GFF715 0.23 -0.3 395,325 + GFF715 0.23 -0.1 395,326 - GFF715 0.23 +0.1 395,350 - GFF715 0.25 -0.6 395,403 + GFF715 0.28 +0.4 395,533 - GFF715 0.35 +0.3 395,721 + GFF715 0.46 -0.0 395,809 - GFF715 0.51 +0.6 396,070 - GFF715 0.66 +0.4 396,070 - GFF715 0.66 +0.8 396,201 + GFF715 0.74 -0.1 396,202 - GFF715 0.74 +1.1 396,277 - GFF715 0.78 +1.0 396,387 + GFF715 0.84 +1.2 396,387 + GFF715 0.84 +0.3 396,388 - GFF715 0.85 +0.1 396,388 - GFF715 0.85 -0.2 396,588 + -1.1 396,588 + +1.2 396,612 + -1.3 396,612 + +0.1 396,613 - -0.1 397,204 + GFF716 0.35 +0.1 397,204 + GFF716 0.35 -0.4 397,204 + GFF716 0.35 +0.0 397,205 - GFF716 0.35 -0.1 397,205 - GFF716 0.35 +0.3 397,205 - GFF716 0.35 -0.2 397,205 - GFF716 0.35 -0.0 397,205 - GFF716 0.35 +0.9 397,205 - GFF716 0.35 -0.1 397,426 + GFF716 0.71 +1.0 397,435 + GFF716 0.73 -0.7 397,436 - GFF716 0.73 -0.2 397,436 - GFF716 0.73 +0.0 397,456 + GFF716 0.76 -0.3 397,457 - GFF716 0.76 -0.5 397,477 + GFF716 0.80 +0.2 397,478 - GFF716 0.80 -0.6 397,505 - GFF716 0.84 +0.1 397,541 - +0.4 397,547 - +0.4 397,547 - -0.1
Or see this region's nucleotide sequence