Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF701

Experiment: Ying_sugar7 rep B; time point 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF699 and GFF700 are separated by 89 nucleotidesGFF700 and GFF701 overlap by 4 nucleotidesGFF701 and GFF702 are separated by 56 nucleotides GFF699 - Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone, at 378,215 to 378,811 GFF699 GFF700 - Two-component system response regulator QseB, at 378,901 to 379,560 GFF700 GFF701 - Sensory histidine kinase QseC, at 379,557 to 380,894 GFF701 GFF702 - Outer membrane stress sensor protease DegS, at 380,951 to 382,429 GFF702 Position (kb) 379 380 381Strain fitness (log2 ratio) -2 -1 0 1 2at 378.564 kb on - strand, within GFF699at 378.638 kb on + strand, within GFF699at 378.647 kb on + strand, within GFF699at 378.648 kb on - strand, within GFF699at 378.648 kb on - strand, within GFF699at 378.648 kb on - strand, within GFF699at 378.710 kb on + strand, within GFF699at 378.711 kb on - strand, within GFF699at 378.716 kb on + strand, within GFF699at 378.716 kb on + strand, within GFF699at 378.743 kb on + strand, within GFF699at 378.820 kb on + strandat 378.820 kb on + strandat 378.973 kb on + strand, within GFF700at 378.973 kb on + strand, within GFF700at 378.973 kb on + strand, within GFF700at 378.974 kb on - strand, within GFF700at 379.033 kb on + strand, within GFF700at 379.033 kb on + strand, within GFF700at 379.033 kb on + strand, within GFF700at 379.034 kb on - strand, within GFF700at 379.192 kb on + strand, within GFF700at 379.192 kb on + strand, within GFF700at 379.192 kb on + strand, within GFF700at 379.192 kb on + strand, within GFF700at 379.192 kb on + strand, within GFF700at 379.193 kb on - strand, within GFF700at 379.193 kb on - strand, within GFF700at 379.193 kb on - strand, within GFF700at 379.193 kb on - strand, within GFF700at 379.193 kb on - strand, within GFF700at 379.193 kb on - strand, within GFF700at 379.193 kb on - strand, within GFF700at 379.207 kb on + strand, within GFF700at 379.207 kb on + strand, within GFF700at 379.208 kb on - strand, within GFF700at 379.208 kb on - strand, within GFF700at 379.435 kb on + strand, within GFF700at 379.436 kb on - strand, within GFF700at 379.436 kb on - strand, within GFF700at 379.477 kb on + strand, within GFF700at 379.477 kb on + strand, within GFF700at 379.477 kb on + strand, within GFF700at 379.477 kb on + strand, within GFF700at 379.477 kb on + strand, within GFF700at 379.477 kb on + strand, within GFF700at 379.478 kb on - strand, within GFF700at 379.478 kb on - strand, within GFF700at 379.478 kb on - strand, within GFF700at 379.478 kb on - strand, within GFF700at 379.478 kb on - strand, within GFF700at 379.478 kb on - strand, within GFF700at 379.480 kb on - strand, within GFF700at 379.480 kb on - strand, within GFF700at 379.540 kb on + strandat 379.541 kb on - strandat 379.541 kb on - strandat 379.541 kb on - strandat 379.541 kb on - strandat 379.650 kb on + strandat 379.650 kb on + strandat 379.650 kb on + strandat 379.651 kb on - strandat 379.690 kb on - strandat 380.613 kb on + strand, within GFF701at 380.613 kb on + strand, within GFF701at 380.614 kb on - strand, within GFF701at 380.614 kb on - strand, within GFF701at 380.614 kb on - strand, within GFF701at 380.739 kb on + strand, within GFF701at 380.740 kb on - strand, within GFF701at 380.881 kb on + strandat 380.881 kb on + strandat 380.881 kb on + strandat 380.881 kb on + strandat 380.908 kb on + strandat 381.731 kb on + strand, within GFF702at 381.731 kb on + strand, within GFF702at 381.731 kb on + strand, within GFF702at 381.731 kb on + strand, within GFF702at 381.731 kb on + strand, within GFF702at 381.731 kb on + strand, within GFF702at 381.732 kb on - strand, within GFF702at 381.732 kb on - strand, within GFF702at 381.732 kb on - strand, within GFF702

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 1
remove
378,564 - GFF699 0.58 +0.3
378,638 + GFF699 0.71 +0.2
378,647 + GFF699 0.72 -0.0
378,648 - GFF699 0.73 +1.2
378,648 - GFF699 0.73 -0.2
378,648 - GFF699 0.73 -0.5
378,710 + GFF699 0.83 +0.2
378,711 - GFF699 0.83 +0.3
378,716 + GFF699 0.84 +0.8
378,716 + GFF699 0.84 +0.1
378,743 + GFF699 0.88 +0.6
378,820 + +0.6
378,820 + +1.0
378,973 + GFF700 0.11 -0.6
378,973 + GFF700 0.11 +0.5
378,973 + GFF700 0.11 +0.5
378,974 - GFF700 0.11 -0.2
379,033 + GFF700 0.20 +0.7
379,033 + GFF700 0.20 -1.7
379,033 + GFF700 0.20 -0.2
379,034 - GFF700 0.20 +0.3
379,192 + GFF700 0.44 +0.4
379,192 + GFF700 0.44 -0.4
379,192 + GFF700 0.44 +0.4
379,192 + GFF700 0.44 -0.4
379,192 + GFF700 0.44 -0.6
379,193 - GFF700 0.44 -0.3
379,193 - GFF700 0.44 -0.2
379,193 - GFF700 0.44 -0.2
379,193 - GFF700 0.44 +2.0
379,193 - GFF700 0.44 +0.3
379,193 - GFF700 0.44 -0.6
379,193 - GFF700 0.44 -0.2
379,207 + GFF700 0.46 -0.3
379,207 + GFF700 0.46 +0.5
379,208 - GFF700 0.47 +0.0
379,208 - GFF700 0.47 +0.2
379,435 + GFF700 0.81 +1.1
379,436 - GFF700 0.81 +1.4
379,436 - GFF700 0.81 +0.7
379,477 + GFF700 0.87 -0.2
379,477 + GFF700 0.87 -0.4
379,477 + GFF700 0.87 -0.2
379,477 + GFF700 0.87 +0.2
379,477 + GFF700 0.87 +0.1
379,477 + GFF700 0.87 -0.2
379,478 - GFF700 0.87 -0.7
379,478 - GFF700 0.87 +0.6
379,478 - GFF700 0.87 +0.1
379,478 - GFF700 0.87 +0.2
379,478 - GFF700 0.87 -0.1
379,478 - GFF700 0.87 +1.0
379,480 - GFF700 0.88 +0.5
379,480 - GFF700 0.88 +0.2
379,540 + -0.3
379,541 - -0.5
379,541 - +0.1
379,541 - -0.4
379,541 - +0.3
379,650 + -1.5
379,650 + -2.0
379,650 + -1.5
379,651 - -2.2
379,690 - -1.2
380,613 + GFF701 0.79 -0.3
380,613 + GFF701 0.79 -0.6
380,614 - GFF701 0.79 -0.3
380,614 - GFF701 0.79 +0.3
380,614 - GFF701 0.79 -0.9
380,739 + GFF701 0.88 -1.2
380,740 - GFF701 0.88 +0.3
380,881 + +0.3
380,881 + -0.4
380,881 + -1.3
380,881 + -0.2
380,908 + -0.5
381,731 + GFF702 0.53 -0.1
381,731 + GFF702 0.53 -0.3
381,731 + GFF702 0.53 +0.1
381,731 + GFF702 0.53 -1.1
381,731 + GFF702 0.53 -0.5
381,731 + GFF702 0.53 -0.1
381,732 - GFF702 0.53 -0.4
381,732 - GFF702 0.53 +0.1
381,732 - GFF702 0.53 +0.6

Or see this region's nucleotide sequence