Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5848

Experiment: Ying_sugar7 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 1
48,461	-				+0.3
48,461	-				-0.0
48,728	+		GFF5847	0.34	-0.2
48,729	-		GFF5847	0.35	+0.6
48,729	-		GFF5847	0.35	+0.3
48,843	-		GFF5847	0.46	-0.2
48,932	-		GFF5847	0.55	-0.4
48,959	+		GFF5847	0.57	-0.2
48,960	-		GFF5847	0.57	+0.2
48,960	-		GFF5847	0.57	+0.8
48,960	-		GFF5847	0.57	-0.0
48,960	-		GFF5847	0.57	-0.7
49,025	+		GFF5847	0.64	+0.2
49,026	-		GFF5847	0.64	-0.0
49,372	+				-0.4
49,401	+				+0.1
49,402	-				-0.7
49,402	-				-0.2
49,594	+		GFF5848	0.22	+0.1
49,595	-		GFF5848	0.22	+0.4
49,734	+		GFF5848	0.38	+0.3
49,735	-		GFF5848	0.38	-0.2
49,767	-		GFF5848	0.42	+0.9
50,004	+		GFF5848	0.70	+0.2
50,004	+		GFF5848	0.70	+0.4
50,124	+		GFF5848	0.84	+0.2
50,125	-		GFF5848	0.84	+2.3
50,125	-		GFF5848	0.84	+0.3
50,162	+		GFF5848	0.88	+0.1
50,279	+				-0.2
50,280	-				+0.1
50,280	-				+0.4
50,304	+				+0.1
50,305	-				+0.4
50,305	-				+0.3
50,636	-		GFF5849	0.32	-0.1
50,704	+		GFF5849	0.38	-0.3
50,705	-		GFF5849	0.38	+0.6
50,726	+		GFF5849	0.40	+0.3
50,726	+		GFF5849	0.40	-0.3
50,727	-		GFF5849	0.40	+0.3
50,727	-		GFF5849	0.40	+0.3
50,737	+		GFF5849	0.41	+0.2
50,738	-		GFF5849	0.41	+0.2
50,738	-		GFF5849	0.41	-0.0
50,738	-		GFF5849	0.41	+0.7
50,738	-		GFF5849	0.41	-0.0
50,746	+		GFF5849	0.42	-0.2
50,747	-		GFF5849	0.42	+0.9
50,866	-		GFF5849	0.52	+0.1
51,201	-		GFF5849	0.81	-0.3
51,201	-		GFF5849	0.81	+0.2