Experiment: Ying_sugar7 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5838 and GFF5839 overlap by 8 nucleotides GFF5839 and GFF5840 overlap by 14 nucleotides GFF5840 and GFF5841 are separated by 53 nucleotides GFF5841 and GFF5842 are separated by 123 nucleotides
GFF5838 - O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26), at 36,473 to 38,023
GFF5838
GFF5839 - Hypothetical Cytosolic Protein, at 38,016 to 38,519
GFF5839
GFF5840 - FIG00431931: hypothetical protein, at 38,506 to 39,735
GFF5840
GFF5841 - Aconitate hydratase X, predicted, at 39,789 to 40,211
GFF5841
GFF5842 - acetyl-CoA synthetase, at 40,335 to 42,347
GFF5842
Position (kb) 38
39
40 Strain fitness (log2 ratio) -1
0
1 at 37.680 kb on - strand, within GFF5838 at 37.680 kb on - strand, within GFF5838 at 38.291 kb on + strand, within GFF5839 at 38.829 kb on - strand, within GFF5840 at 39.370 kb on - strand, within GFF5840 at 39.575 kb on - strand, within GFF5840 at 39.583 kb on + strand, within GFF5840 at 39.583 kb on + strand, within GFF5840 at 39.825 kb on + strand at 39.876 kb on + strand, within GFF5841 at 39.877 kb on - strand, within GFF5841 at 39.888 kb on + strand, within GFF5841 at 40.076 kb on + strand, within GFF5841 at 40.077 kb on - strand, within GFF5841 at 40.234 kb on + strand at 40.265 kb on - strand at 40.462 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 1 remove 37,680 - GFF5838 0.78 -0.2 37,680 - GFF5838 0.78 +0.2 38,291 + GFF5839 0.55 -0.3 38,829 - GFF5840 0.26 -0.4 39,370 - GFF5840 0.70 -0.6 39,575 - GFF5840 0.87 -0.4 39,583 + GFF5840 0.88 -0.8 39,583 + GFF5840 0.88 +0.1 39,825 + +0.3 39,876 + GFF5841 0.21 +0.1 39,877 - GFF5841 0.21 -0.6 39,888 + GFF5841 0.23 +0.0 40,076 + GFF5841 0.68 -0.3 40,077 - GFF5841 0.68 +1.1 40,234 + -0.3 40,265 - -0.1 40,462 + +0.1
Or see this region's nucleotide sequence