Experiment: Ying_sugar7 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF53 and GFF54 are separated by 7 nucleotides GFF54 and GFF55 overlap by 4 nucleotides GFF55 and GFF56 are separated by 4 nucleotides
GFF52 - hypothetical protein, at 53,520 to 54,581
GFF52
GFF53 - GDP-L-fucose synthetase (EC 1.1.1.271), at 54,578 to 55,573
GFF53
GFF54 - GDP-mannose 4,6-dehydratase (EC 4.2.1.47), at 55,581 to 56,699
GFF54
GFF55 - EpsI protein, at 56,696 to 57,406
GFF55
GFF56 - Eight transmembrane protein EpsH, at 57,411 to 58,274
GFF56
Position (kb) 55
56
57 Strain fitness (log2 ratio) -1
0
1 at 54.733 kb on - strand, within GFF53 at 54.933 kb on + strand, within GFF53 at 54.934 kb on - strand, within GFF53 at 55.054 kb on - strand, within GFF53 at 55.399 kb on - strand, within GFF53 at 55.488 kb on + strand at 55.551 kb on + strand at 55.552 kb on - strand at 55.552 kb on - strand at 55.769 kb on - strand, within GFF54 at 56.165 kb on - strand, within GFF54 at 56.165 kb on - strand, within GFF54 at 56.165 kb on - strand, within GFF54 at 56.209 kb on + strand, within GFF54 at 56.209 kb on + strand, within GFF54 at 56.287 kb on + strand, within GFF54 at 56.311 kb on + strand, within GFF54 at 56.513 kb on - strand, within GFF54 at 56.618 kb on - strand at 56.953 kb on - strand, within GFF55 at 57.166 kb on - strand, within GFF55 at 57.190 kb on - strand, within GFF55 at 57.568 kb on + strand, within GFF56 at 57.686 kb on - strand, within GFF56
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 1 remove 54,733 - GFF53 0.16 -0.5 54,933 + GFF53 0.36 +0.3 54,934 - GFF53 0.36 -1.7 55,054 - GFF53 0.48 +0.9 55,399 - GFF53 0.82 +0.7 55,488 + +0.3 55,551 + -0.2 55,552 - +0.9 55,552 - -0.7 55,769 - GFF54 0.17 -0.5 56,165 - GFF54 0.52 -0.4 56,165 - GFF54 0.52 +0.2 56,165 - GFF54 0.52 +0.2 56,209 + GFF54 0.56 +0.1 56,209 + GFF54 0.56 -1.2 56,287 + GFF54 0.63 +0.1 56,311 + GFF54 0.65 -0.4 56,513 - GFF54 0.83 -0.5 56,618 - +0.2 56,953 - GFF55 0.36 +0.3 57,166 - GFF55 0.66 +1.1 57,190 - GFF55 0.69 -0.4 57,568 + GFF56 0.18 +1.0 57,686 - GFF56 0.32 +0.2
Or see this region's nucleotide sequence