Experiment: Ying_sugar7 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF511 and GFF512 are separated by 20 nucleotides GFF512 and GFF513 overlap by 4 nucleotides GFF513 and GFF514 are separated by 70 nucleotides
GFF511 - expressed protein, at 179,165 to 180,586
GFF511
GFF512 - Small uncharacterized protein Bpro_4170, at 180,607 to 180,957
GFF512
GFF513 - Enoyl-CoA hydratase (EC 4.2.1.17), at 180,954 to 181,745
GFF513
GFF514 - Esterase/lipase, at 181,816 to 182,778
GFF514
Position (kb) 180
181
182 Strain fitness (log2 ratio) -1
0
1
2 at 180.032 kb on + strand, within GFF511 at 180.287 kb on + strand, within GFF511 at 180.287 kb on + strand, within GFF511 at 180.288 kb on - strand, within GFF511 at 180.296 kb on + strand, within GFF511 at 180.507 kb on + strand at 180.511 kb on + strand at 180.511 kb on + strand at 180.511 kb on + strand at 180.512 kb on - strand at 181.153 kb on - strand, within GFF513 at 181.368 kb on + strand, within GFF513 at 181.369 kb on - strand, within GFF513 at 181.779 kb on - strand at 181.779 kb on - strand at 181.924 kb on + strand, within GFF514 at 181.976 kb on - strand, within GFF514 at 181.976 kb on - strand, within GFF514 at 181.976 kb on - strand, within GFF514 at 182.014 kb on + strand, within GFF514 at 182.014 kb on + strand, within GFF514 at 182.059 kb on + strand, within GFF514 at 182.059 kb on + strand, within GFF514 at 182.059 kb on + strand, within GFF514 at 182.059 kb on + strand, within GFF514 at 182.059 kb on + strand, within GFF514 at 182.059 kb on + strand, within GFF514 at 182.060 kb on - strand, within GFF514 at 182.060 kb on - strand, within GFF514 at 182.060 kb on - strand, within GFF514 at 182.060 kb on - strand, within GFF514 at 182.060 kb on - strand, within GFF514 at 182.140 kb on + strand, within GFF514 at 182.140 kb on + strand, within GFF514 at 182.141 kb on - strand, within GFF514 at 182.141 kb on - strand, within GFF514 at 182.562 kb on + strand, within GFF514 at 182.639 kb on - strand, within GFF514 at 182.651 kb on + strand, within GFF514 at 182.652 kb on - strand, within GFF514 at 182.652 kb on - strand, within GFF514
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 1 remove 180,032 + GFF511 0.61 +0.2 180,287 + GFF511 0.79 +0.2 180,287 + GFF511 0.79 -0.9 180,288 - GFF511 0.79 -0.2 180,296 + GFF511 0.80 +0.3 180,507 + +1.1 180,511 + +0.1 180,511 + -1.2 180,511 + +0.9 180,512 - +0.0 181,153 - GFF513 0.25 +0.6 181,368 + GFF513 0.52 +0.3 181,369 - GFF513 0.52 -0.3 181,779 - -0.0 181,779 - +0.2 181,924 + GFF514 0.11 +0.1 181,976 - GFF514 0.17 +0.4 181,976 - GFF514 0.17 +1.2 181,976 - GFF514 0.17 +0.4 182,014 + GFF514 0.21 +0.2 182,014 + GFF514 0.21 +0.7 182,059 + GFF514 0.25 +0.5 182,059 + GFF514 0.25 +1.0 182,059 + GFF514 0.25 -0.4 182,059 + GFF514 0.25 -0.5 182,059 + GFF514 0.25 -0.6 182,059 + GFF514 0.25 +0.7 182,060 - GFF514 0.25 +0.3 182,060 - GFF514 0.25 -0.0 182,060 - GFF514 0.25 -1.7 182,060 - GFF514 0.25 +2.1 182,060 - GFF514 0.25 -0.3 182,140 + GFF514 0.34 +0.0 182,140 + GFF514 0.34 +0.4 182,141 - GFF514 0.34 -0.1 182,141 - GFF514 0.34 +0.0 182,562 + GFF514 0.77 -0.2 182,639 - GFF514 0.85 -0.1 182,651 + GFF514 0.87 +0.1 182,652 - GFF514 0.87 +0.6 182,652 - GFF514 0.87 +0.1
Or see this region's nucleotide sequence