Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5095

Experiment: Ying_sugar7 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 1
2,109,231	+				-0.4
2,109,231	+				+1.0
2,109,232	-				+0.3
2,109,232	-				+0.1
2,109,232	-				-0.2
2,109,447	+				+0.4
2,109,462	+				-1.2
2,109,462	+				-0.8
2,109,463	-				-0.1
2,109,809	+				-0.5
2,109,809	+				+0.9
2,109,810	-				+0.1
2,109,961	-				+0.9
2,109,982	+				-0.2
2,109,983	-				+0.4
2,110,094	+				+0.4
2,110,095	-				-0.2
2,110,112	+				+0.2
2,110,112	+				-0.7
2,110,112	+				-1.2
2,110,112	+				-0.3
2,110,113	-				+0.4
2,110,113	-				-0.3
2,110,208	+				+0.3
2,110,208	+				+1.2
2,110,209	-				-1.8
2,110,209	-				-0.3
2,110,274	+				+0.1
2,110,275	-				-0.8
2,110,275	-				+0.4
2,110,275	-				-0.2
2,110,361	+				-0.3
2,110,361	+				+0.1
2,110,362	-				+0.6
2,110,362	-				+0.2
2,110,362	-				-0.7
2,110,466	+		GFF5095	0.11	-0.2
2,110,474	+		GFF5095	0.11	+0.0
2,110,475	-		GFF5095	0.11	-0.5
2,110,490	+		GFF5095	0.12	+0.2
2,110,715	+		GFF5095	0.22	-0.2
2,110,715	+		GFF5095	0.22	-0.2
2,110,715	+		GFF5095	0.22	+0.2
2,110,716	-		GFF5095	0.22	-0.2
2,110,744	+		GFF5095	0.23	-0.5
2,110,790	+		GFF5095	0.25	+1.4
2,110,791	-		GFF5095	0.25	+0.2
2,110,823	+		GFF5095	0.26	+0.1
2,110,823	+		GFF5095	0.26	-0.2
2,110,824	-		GFF5095	0.27	+0.2
2,110,824	-		GFF5095	0.27	+0.0
2,110,988	+		GFF5095	0.34	+0.0
2,110,989	-		GFF5095	0.34	+0.9
2,110,989	-		GFF5095	0.34	-0.2
2,111,772	-		GFF5095	0.68	+0.2
2,112,269	+				-0.6
2,112,269	+				-0.2
2,112,519	+				+0.3
2,112,709	+				-1.2
2,112,709	+				-0.5
2,112,709	+				-1.3
2,112,730	+		GFF5096	0.11	-0.3
2,112,730	+		GFF5096	0.11	+0.2
2,112,730	+		GFF5096	0.11	-0.6
2,112,731	-		GFF5096	0.11	-0.7
2,112,731	-		GFF5096	0.11	+0.0
2,112,763	+		GFF5096	0.14	-0.3
2,112,764	-		GFF5096	0.15	-0.3
2,112,764	-		GFF5096	0.15	-0.1
2,112,764	-		GFF5096	0.15	+0.2
2,113,090	+		GFF5096	0.47	+0.1
2,113,090	+		GFF5096	0.47	-0.1
2,113,090	+		GFF5096	0.47	-0.0
2,113,091	-		GFF5096	0.47	+0.2
2,113,091	-		GFF5096	0.47	+0.4
2,113,108	+		GFF5096	0.49	-0.4
2,113,108	+		GFF5096	0.49	+0.1
2,113,108	+		GFF5096	0.49	-0.1
2,113,109	-		GFF5096	0.49	-0.3
2,113,109	-		GFF5096	0.49	-1.2
2,113,165	+		GFF5096	0.55	-0.1
2,113,166	-		GFF5096	0.55	-0.5
2,113,171	+		GFF5096	0.55	-0.7
2,113,402	+		GFF5096	0.78	-0.6
2,113,417	+		GFF5096	0.80	-0.7
2,113,417	+		GFF5096	0.80	-0.0
2,113,417	+		GFF5096	0.80	-0.3
2,113,417	+		GFF5096	0.80	-0.0
2,113,489	+		GFF5096	0.87	-0.0
2,113,489	+		GFF5096	0.87	-0.3
2,113,489	+		GFF5096	0.87	-0.5
2,113,490	-		GFF5096	0.87	+0.6
2,113,490	-		GFF5096	0.87	-0.1
2,113,490	-		GFF5096	0.87	-0.3
2,113,490	-		GFF5096	0.87	-0.0