Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF494

Experiment: Ying_sugar7 rep B; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF492 and GFF493 are separated by 53 nucleotidesGFF493 and GFF494 are separated by 32 nucleotidesGFF494 and GFF495 are separated by 515 nucleotides GFF492 - hypothetical protein, at 162,528 to 162,950 GFF492 GFF493 - hypothetical protein, at 163,004 to 163,180 GFF493 GFF494 - hypothetical protein, at 163,213 to 163,485 GFF494 GFF495 - Type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG), at 164,001 to 165,743 GFF495 Position (kb) 163 164Strain fitness (log2 ratio) -2 -1 0 1at 163.276 kb on + strand, within GFF494at 163.522 kb on - strandat 164.073 kb on + strandat 164.079 kb on + strandat 164.079 kb on + strandat 164.079 kb on + strandat 164.080 kb on - strandat 164.257 kb on - strand, within GFF495at 164.436 kb on + strand, within GFF495

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 1
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163,276 + GFF494 0.23 -1.5
163,522 - -0.4
164,073 + +0.7
164,079 + -0.4
164,079 + +0.1
164,079 + -2.4
164,080 - -0.4
164,257 - GFF495 0.15 -0.1
164,436 + GFF495 0.25 -0.5

Or see this region's nucleotide sequence