Experiment: Ying_sugar7 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4800 and GFF4801 are separated by 11 nucleotides GFF4801 and GFF4802 are separated by 17 nucleotides GFF4802 and GFF4803 are separated by 103 nucleotides GFF4803 and GFF4804 are separated by 81 nucleotides
GFF4800 - hypothetical protein, at 1,813,316 to 1,813,876
GFF4800
GFF4801 - hypothetical protein, at 1,813,888 to 1,814,478
GFF4801
GFF4802 - Oxidoreductase, FMN-binding, at 1,814,496 to 1,815,632
GFF4802
GFF4803 - Transcriptional regulator, GntR family, at 1,815,736 to 1,816,455
GFF4803
GFF4804 - InterPro IPR005806 COGs COG2146, at 1,816,537 to 1,817,916
GFF4804
Position (kb)
1814
1815
1816 Strain fitness (log2 ratio)
-1
0
1 at 1813.547 kb on + strand, within GFF4800 at 1813.547 kb on + strand, within GFF4800 at 1813.551 kb on + strand, within GFF4800 at 1813.551 kb on + strand, within GFF4800 at 1813.552 kb on - strand, within GFF4800 at 1813.669 kb on + strand, within GFF4800 at 1813.670 kb on - strand, within GFF4800 at 1813.733 kb on + strand, within GFF4800 at 1813.733 kb on + strand, within GFF4800 at 1813.733 kb on + strand, within GFF4800 at 1813.733 kb on + strand, within GFF4800 at 1813.839 kb on - strand at 1813.839 kb on - strand at 1813.839 kb on - strand at 1813.839 kb on - strand at 1813.839 kb on - strand at 1814.029 kb on + strand, within GFF4801 at 1814.029 kb on + strand, within GFF4801 at 1814.029 kb on + strand, within GFF4801 at 1814.030 kb on - strand, within GFF4801 at 1814.098 kb on + strand, within GFF4801 at 1814.098 kb on + strand, within GFF4801 at 1814.098 kb on + strand, within GFF4801 at 1814.099 kb on - strand, within GFF4801 at 1814.099 kb on - strand, within GFF4801 at 1814.099 kb on - strand, within GFF4801 at 1814.152 kb on + strand, within GFF4801 at 1814.152 kb on + strand, within GFF4801 at 1814.153 kb on - strand, within GFF4801 at 1814.153 kb on - strand, within GFF4801 at 1814.524 kb on + strand at 1814.525 kb on - strand at 1814.545 kb on + strand at 1814.545 kb on + strand at 1814.546 kb on - strand at 1814.546 kb on - strand at 1814.546 kb on - strand at 1814.546 kb on - strand at 1814.620 kb on + strand, within GFF4802 at 1814.620 kb on + strand, within GFF4802 at 1814.620 kb on + strand, within GFF4802 at 1814.620 kb on + strand, within GFF4802 at 1814.621 kb on - strand, within GFF4802 at 1814.621 kb on - strand, within GFF4802 at 1814.686 kb on + strand, within GFF4802 at 1814.752 kb on + strand, within GFF4802 at 1814.753 kb on - strand, within GFF4802 at 1814.815 kb on + strand, within GFF4802 at 1814.815 kb on + strand, within GFF4802 at 1814.815 kb on + strand, within GFF4802 at 1814.816 kb on - strand, within GFF4802 at 1814.816 kb on - strand, within GFF4802 at 1814.816 kb on - strand, within GFF4802 at 1814.816 kb on - strand, within GFF4802 at 1814.816 kb on - strand, within GFF4802 at 1815.004 kb on + strand, within GFF4802 at 1815.004 kb on + strand, within GFF4802 at 1815.055 kb on + strand, within GFF4802 at 1815.124 kb on + strand, within GFF4802 at 1815.125 kb on - strand, within GFF4802 at 1815.386 kb on - strand, within GFF4802 at 1815.386 kb on - strand, within GFF4802 at 1815.407 kb on - strand, within GFF4802 at 1815.475 kb on + strand, within GFF4802 at 1815.476 kb on - strand, within GFF4802 at 1815.476 kb on - strand, within GFF4802 at 1815.476 kb on - strand, within GFF4802 at 1815.476 kb on - strand, within GFF4802 at 1815.478 kb on + strand, within GFF4802 at 1815.479 kb on - strand, within GFF4802 at 1815.479 kb on - strand, within GFF4802 at 1815.911 kb on + strand, within GFF4803 at 1816.082 kb on + strand, within GFF4803 at 1816.083 kb on - strand, within GFF4803 at 1816.268 kb on + strand, within GFF4803 at 1816.269 kb on - strand, within GFF4803 at 1816.488 kb on + strand at 1816.515 kb on + strand at 1816.515 kb on + strand at 1816.515 kb on + strand at 1816.515 kb on + strand at 1816.515 kb on + strand at 1816.515 kb on + strand at 1816.516 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 1 remove 1,813,547 + GFF4800 0.41 -0.8 1,813,547 + GFF4800 0.41 +0.3 1,813,551 + GFF4800 0.42 +0.4 1,813,551 + GFF4800 0.42 +0.1 1,813,552 - GFF4800 0.42 -0.2 1,813,669 + GFF4800 0.63 -0.2 1,813,670 - GFF4800 0.63 +0.2 1,813,733 + GFF4800 0.74 +0.5 1,813,733 + GFF4800 0.74 +0.3 1,813,733 + GFF4800 0.74 -1.3 1,813,733 + GFF4800 0.74 +0.2 1,813,839 - +0.2 1,813,839 - +0.8 1,813,839 - +0.3 1,813,839 - +0.3 1,813,839 - -0.9 1,814,029 + GFF4801 0.24 +1.0 1,814,029 + GFF4801 0.24 +0.3 1,814,029 + GFF4801 0.24 -0.2 1,814,030 - GFF4801 0.24 +0.3 1,814,098 + GFF4801 0.36 +1.7 1,814,098 + GFF4801 0.36 +0.3 1,814,098 + GFF4801 0.36 -0.5 1,814,099 - GFF4801 0.36 -0.3 1,814,099 - GFF4801 0.36 -0.1 1,814,099 - GFF4801 0.36 -0.2 1,814,152 + GFF4801 0.45 +1.1 1,814,152 + GFF4801 0.45 -0.3 1,814,153 - GFF4801 0.45 +0.1 1,814,153 - GFF4801 0.45 +0.4 1,814,524 + +0.7 1,814,525 - +0.6 1,814,545 + -0.2 1,814,545 + +0.0 1,814,546 - -0.3 1,814,546 - +0.6 1,814,546 - +0.2 1,814,546 - +0.3 1,814,620 + GFF4802 0.11 -0.1 1,814,620 + GFF4802 0.11 -0.0 1,814,620 + GFF4802 0.11 -0.3 1,814,620 + GFF4802 0.11 -0.1 1,814,621 - GFF4802 0.11 +0.1 1,814,621 - GFF4802 0.11 -0.3 1,814,686 + GFF4802 0.17 -0.5 1,814,752 + GFF4802 0.23 -0.9 1,814,753 - GFF4802 0.23 +0.1 1,814,815 + GFF4802 0.28 -0.3 1,814,815 + GFF4802 0.28 -0.2 1,814,815 + GFF4802 0.28 -0.6 1,814,816 - GFF4802 0.28 -0.0 1,814,816 - GFF4802 0.28 +0.4 1,814,816 - GFF4802 0.28 +0.3 1,814,816 - GFF4802 0.28 +0.1 1,814,816 - GFF4802 0.28 -0.1 1,815,004 + GFF4802 0.45 -0.1 1,815,004 + GFF4802 0.45 -0.0 1,815,055 + GFF4802 0.49 -0.1 1,815,124 + GFF4802 0.55 -0.3 1,815,125 - GFF4802 0.55 +0.1 1,815,386 - GFF4802 0.78 -0.2 1,815,386 - GFF4802 0.78 +0.1 1,815,407 - GFF4802 0.80 -0.1 1,815,475 + GFF4802 0.86 +1.3 1,815,476 - GFF4802 0.86 -0.0 1,815,476 - GFF4802 0.86 +0.2 1,815,476 - GFF4802 0.86 +0.8 1,815,476 - GFF4802 0.86 +0.2 1,815,478 + GFF4802 0.86 +1.0 1,815,479 - GFF4802 0.86 -0.9 1,815,479 - GFF4802 0.86 -0.2 1,815,911 + GFF4803 0.24 +0.1 1,816,082 + GFF4803 0.48 -0.9 1,816,083 - GFF4803 0.48 -0.2 1,816,268 + GFF4803 0.74 -0.9 1,816,269 - GFF4803 0.74 -0.6 1,816,488 + +0.8 1,816,515 + +0.3 1,816,515 + +0.1 1,816,515 + -0.2 1,816,515 + +0.6 1,816,515 + +0.5 1,816,515 + -0.3 1,816,516 - -0.2
Or see this region's nucleotide sequence