Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4764

Experiment: Ying_sugar7 rep B; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4763 and GFF4764 are separated by 3 nucleotidesGFF4764 and GFF4765 are separated by 13 nucleotides GFF4763 - membrane protein-like, at 1,769,510 to 1,771,051 GFF4763 GFF4764 - Glycosyltransferase, at 1,771,055 to 1,772,260 GFF4764 GFF4765 - glycosyl transferase, group 1, at 1,772,274 to 1,773,389 GFF4765 Position (kb) 1771 1772 1773Strain fitness (log2 ratio) -1 0 1at 1770.100 kb on - strand, within GFF4763at 1770.202 kb on - strand, within GFF4763at 1770.225 kb on + strand, within GFF4763at 1770.225 kb on + strand, within GFF4763at 1770.265 kb on - strand, within GFF4763at 1770.477 kb on + strand, within GFF4763at 1770.477 kb on + strand, within GFF4763at 1770.478 kb on - strand, within GFF4763at 1770.478 kb on - strand, within GFF4763at 1770.600 kb on + strand, within GFF4763at 1770.637 kb on - strand, within GFF4763at 1770.637 kb on - strand, within GFF4763at 1770.637 kb on - strand, within GFF4763at 1770.657 kb on + strand, within GFF4763at 1770.657 kb on + strand, within GFF4763at 1770.660 kb on + strand, within GFF4763at 1770.660 kb on + strand, within GFF4763at 1770.660 kb on + strand, within GFF4763at 1770.837 kb on + strand, within GFF4763at 1770.837 kb on + strand, within GFF4763at 1770.837 kb on + strand, within GFF4763at 1770.837 kb on + strand, within GFF4763at 1770.840 kb on + strand, within GFF4763at 1770.840 kb on + strand, within GFF4763at 1770.841 kb on - strand, within GFF4763at 1770.854 kb on + strand, within GFF4763at 1770.906 kb on + strandat 1771.326 kb on + strand, within GFF4764at 1771.327 kb on - strand, within GFF4764at 1771.327 kb on - strand, within GFF4764at 1771.353 kb on + strand, within GFF4764at 1771.938 kb on + strand, within GFF4764at 1771.939 kb on - strand, within GFF4764at 1771.939 kb on - strand, within GFF4764at 1771.947 kb on + strand, within GFF4764at 1771.947 kb on + strand, within GFF4764at 1771.947 kb on + strand, within GFF4764at 1771.947 kb on + strand, within GFF4764at 1771.948 kb on - strand, within GFF4764at 1771.948 kb on - strand, within GFF4764at 1771.948 kb on - strand, within GFF4764at 1771.948 kb on - strand, within GFF4764at 1772.010 kb on + strand, within GFF4764at 1772.031 kb on + strand, within GFF4764at 1772.031 kb on + strand, within GFF4764at 1772.247 kb on + strandat 1772.247 kb on + strandat 1772.248 kb on - strandat 1772.347 kb on + strandat 1772.629 kb on + strand, within GFF4765at 1773.106 kb on + strand, within GFF4765at 1773.106 kb on + strand, within GFF4765at 1773.107 kb on - strand, within GFF4765at 1773.107 kb on - strand, within GFF4765at 1773.107 kb on - strand, within GFF4765

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 1
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1,770,100 - GFF4763 0.38 -0.2
1,770,202 - GFF4763 0.45 -0.1
1,770,225 + GFF4763 0.46 -0.3
1,770,225 + GFF4763 0.46 -0.5
1,770,265 - GFF4763 0.49 -0.2
1,770,477 + GFF4763 0.63 +0.6
1,770,477 + GFF4763 0.63 -0.1
1,770,478 - GFF4763 0.63 +0.7
1,770,478 - GFF4763 0.63 -0.2
1,770,600 + GFF4763 0.71 -0.0
1,770,637 - GFF4763 0.73 -0.3
1,770,637 - GFF4763 0.73 -0.7
1,770,637 - GFF4763 0.73 -0.1
1,770,657 + GFF4763 0.74 -1.4
1,770,657 + GFF4763 0.74 -1.2
1,770,660 + GFF4763 0.75 -0.3
1,770,660 + GFF4763 0.75 +0.1
1,770,660 + GFF4763 0.75 +1.1
1,770,837 + GFF4763 0.86 -0.2
1,770,837 + GFF4763 0.86 -0.4
1,770,837 + GFF4763 0.86 -0.2
1,770,837 + GFF4763 0.86 -0.2
1,770,840 + GFF4763 0.86 -0.3
1,770,840 + GFF4763 0.86 +0.1
1,770,841 - GFF4763 0.86 -0.3
1,770,854 + GFF4763 0.87 -0.4
1,770,906 + +0.0
1,771,326 + GFF4764 0.22 +1.0
1,771,327 - GFF4764 0.23 +1.3
1,771,327 - GFF4764 0.23 +0.3
1,771,353 + GFF4764 0.25 +1.2
1,771,938 + GFF4764 0.73 +0.3
1,771,939 - GFF4764 0.73 +0.3
1,771,939 - GFF4764 0.73 +0.1
1,771,947 + GFF4764 0.74 +0.4
1,771,947 + GFF4764 0.74 +0.4
1,771,947 + GFF4764 0.74 +0.8
1,771,947 + GFF4764 0.74 +0.6
1,771,948 - GFF4764 0.74 +0.1
1,771,948 - GFF4764 0.74 -0.1
1,771,948 - GFF4764 0.74 +0.3
1,771,948 - GFF4764 0.74 +0.2
1,772,010 + GFF4764 0.79 -1.6
1,772,031 + GFF4764 0.81 -0.3
1,772,031 + GFF4764 0.81 +0.9
1,772,247 + -1.4
1,772,247 + +0.7
1,772,248 - +0.6
1,772,347 + -1.6
1,772,629 + GFF4765 0.32 +0.7
1,773,106 + GFF4765 0.75 -0.3
1,773,106 + GFF4765 0.75 +0.5
1,773,107 - GFF4765 0.75 +0.9
1,773,107 - GFF4765 0.75 +0.7
1,773,107 - GFF4765 0.75 -0.1

Or see this region's nucleotide sequence